Mangifera indica (mango): 123215713
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Entry
123215713 CDS
T07684
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123215713
09123 Folding, sorting and degradation
03018 RNA degradation
123215713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123215713
03041 Spliceosome [BR:
minc03041
]
123215713
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123215713
mRNA degradation factors
5'-3' decay
Lsm complex
123215713
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123215713
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
123215713
NCBI-ProteinID:
XP_044491857
LinkDB
All DBs
Position
5:complement(14616904..14619520)
Genome browser
AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatccttcgcagctcctgccatcagagctaatagacaggtgcataggatcc
aaaatatgggtgataatgaaaggagacaaggagcttgttggtacactcaggggattcgat
gtatacgtcaacatggtcctcgaagacgtcactgaatatgagatcacagctgaaggtaga
cggatcacaaagctcgatcagattttacttaatggaaacaacattgctattctggttcct
ggtggctcacctgatccagaatga
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