KEGG   Mangifera indica (mango): 123215713
Entry
123215713         CDS       T07684                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
minc  Mangifera indica (mango)
Pathway
minc03018  RNA degradation
minc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123215713
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123215713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:minc03019]
    123215713
   03041 Spliceosome [BR:minc03041]
    123215713
Messenger RNA biogenesis [BR:minc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123215713
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123215713
Spliceosome [BR:minc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123215713
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 123215713
NCBI-ProteinID: XP_044491857
LinkDB
Position
5:complement(14616904..14619520)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggccaacaatccttcgcagctcctgccatcagagctaatagacaggtgcataggatcc
aaaatatgggtgataatgaaaggagacaaggagcttgttggtacactcaggggattcgat
gtatacgtcaacatggtcctcgaagacgtcactgaatatgagatcacagctgaaggtaga
cggatcacaaagctcgatcagattttacttaatggaaacaacattgctattctggttcct
ggtggctcacctgatccagaatga

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