Mangifera indica (mango): 123215784
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Entry
123215784 CDS
T07684
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123215784
Spliceosome [BR:
minc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
123215784
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_12
NRDE-2
UTP6_C
TPR_10
Motif
Other DBs
NCBI-GeneID:
123215784
NCBI-ProteinID:
XP_044491951
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Position
5:14317110..14326561
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AA seq
869 aa
AA seq
DB search
MGDSETLVAETSAVMSYSSAGYTNTSYAGASTNSVPDAGAFASGAAGDFAASGASVDGTY
TVPAAGSGLSDGNAYNMDPNSVMQQVPAAGATATKDNVTGLENASMAPSHAASYSSLNGN
VSETGHVTTMENGNSLGIGSGAPSGQGVVDGLVVSAMSGEEDRLWSIVKANSSDFNAWTT
LLEETEKLAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARMGSMDKVVEVYERAVQG
VTYSVDIWLHYSIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWEKYIEYEYIQQEWS
RVAMIYTRMLENPNQQLDRHFSSFKEFTGSRPLSELRIAEETTAATDAEAISEAIDEVKA
NEGEDQPEAAEHSFKPVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYF
HVKPLSIAELENWHNYLDFIEREGDFNKVCSCLPNHLSVRQRRVPVYEGPLYSTNGVVKL
YERCLIACANYPEYWIRYVLCMEASGSMDLADNALARATQVFVKRVPEIHLFAARFKEQN
VDIDGARAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQT
LPMLYAQYSRFVCLVSGNAEKAREILVNSLEHVQLSKPLLEALIHFESIQSPPRQFDYLE
SLVDKFIVPNPDTSNTASAAEREELSCIFVEFLGLFGDSQSIKRAEDRHAKLFLPHRSMS
ELKKRHAEDFLASERAKMAKSYSGAPSPAHSLIGAYPSAQNPWTAGYGVQPQAWPPATQA
QAQQYPAYGQQQAAYGVYSGYGSSYATPQIPTSAPQTAAYGAYPPTYPVQSAFPQQSYAQ
PTAAAATVAPAQQPAATAAVPQAYYGSYY
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgagactctagttgctgaaacatctgctgtcatgagttattcatctgca
ggctacacaaacactagttatgctggtgccagcacaaattctgttcctgatgctggtgct
tttgcctctggggctgctggagattttgctgcctctggtgcttcagtggatggaacttat
actgtacctgctgctggttctggtttaagtgatgggaatgcttataatatggatcctaat
tctgttatgcaacaagttccagctgctggggccaccgccacaaaggataatgttactggt
ttggaaaatgcatccatggccccatcacatgctgccagttatagttctctaaatggcaat
gttagtgaaactggacatgtaactacaatggaaaatggaaattctttaggtattggaagt
ggagctcccagcggacaaggtgttgtggatggattggtagtgtcagcaatgtcaggtgaa
gaagatcgattgtggagcattgtgaaggctaattcgtctgattttaatgcatggaccact
ttacttgaagagacagagaagctggcggaggataacatactgaagatacgtagagtttat
gatgcttttttggctgaatttcctttgtgttatggttattggaagaagtatgctgatcat
gaggcacgcatggggtccatggacaaagttgtagaggtttatgaacgagctgttcaaggg
gtgacatattcggtagatatttggttgcattacagcatatttgctataaacacatatgga
gatccagaaactatccgaaggctttttgaacggggtttggcatatgttggaacagattac
ctttccttccccctctgggagaaatacattgaatatgagtacatacagcaggagtggagt
cgtgttgccatgatttacactaggatgttggaaaatccgaatcagcaattagatcggcat
ttcagcagttttaaggagttcactggaagtcgacctttgtcagagttgaggattgctgag
gaaacaactgctgctactgatgctgaagcaatttctgaggccattgatgaagtaaaagca
aatgagggagaggaccaacctgaagcagctgagcattcttttaaacctgtaagtgctggc
ttaacagaagcagaggagttggagaagtatatcgccattagagaagagatgtataagaaa
gctaaagagttcgattctaagatcattggttttgaaacagctattaggagaccctatttt
catgtgaagccactaagtattgcggagcttgagaattggcataattatctggattttata
gaaagagaaggagacttcaataaggtgtgttcttgtcttcctaaccatctatctgtcagg
caaaggagggtccctgtatatgaggggcctctctattctactaatggagtggtgaagtta
tatgaaagatgtttaatagcatgtgcgaattatcctgaatactggatacgctatgtgttg
tgcatggaagccagtggaagtatggatctggcagataatgcccttgctcgtgcaactcaa
gtctttgtcaagagagtgccggagattcacctatttgctgcccgattcaaggagcagaat
gtggatatagatggtgctcgagcagcttatcaacttgttcatactgaaatttctcctggc
cttcttgaagccattatcaagcatgcaaacatggaacatcggctgggcaatcttgaagat
gccttttctttatatgaacaggctattgccattgagaagggaaaagaacattcacaaaca
ttaccaatgttgtatgcacagtactctcgttttgtctgcttggtttctggaaacgcagag
aaggctcgggaaattcttgtcaactcacttgagcatgtacaactatcaaaaccacttctt
gaggcattgattcattttgagtcaattcagtctccaccaaggcaatttgattatttggag
tcattagttgacaagtttattgtgcccaatcctgatacctccaacactgcaagtgctgct
gagagggaagagctatcttgcatttttgtggagtttctcggtctctttggagattcacag
tccatcaagagggctgaagaccggcacgcaaaattgttcttacctcataggagtatgtca
gagttaaaaaaacgtcatgctgaggatttcttggcttcagagagggcaaagatggccaaa
tcatattctggtgctccgtcccctgcccattctttgattggtgcttatccaagtgctcaa
aatccttggactgctggttatggtgtgcagccccaagcttggccaccagctacacaagca
caggcacagcaataccctgcctatggtcaacagcaggctgcatacggtgtatatagtggt
tatggaagtagttatgctactcctcaaataccaacatcagcaccacaaactgctgcttat
ggtgcttatcctcctacttatcccgttcagtctgcctttccccaacaaagttatgcacag
ccaacagcagcagcagcaacagtagctccagcccagcaacctgcagccactgccgcagtc
ccacaggcctattatggaagttattattaa
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