Mangifera indica (mango): 123216076
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Entry
123216076 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123216076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123216076
03012 Translation factors [BR:
minc03012
]
123216076
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123216076
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123216076
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123216076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
Ank_2
Ank_5
AAA_22
ATPase
Ank
nSTAND3
HA2_N
AAA_19
AAA_7
ABC_tran
Ank_3
PhoH
AAA_25
Rad17
AAA_23
Motif
Other DBs
NCBI-GeneID:
123216076
NCBI-ProteinID:
XP_044492369
LinkDB
All DBs
Position
5:complement(15375869..15382946)
Genome browser
AA seq
1215 aa
AA seq
DB search
MGKKRQKKGEEQQRQNPNIAEATRIRISQVLQHFRVKKDDVYTFDANLSNHERAVVHEVC
RKMGMKSKSSGRGNLRRVSVYKAKKGVEKVKERDNQTKLMFSKESKGVLQDLFTRYPPDD
GESGEKLVAKHGGKNDKKHGKRDDIFCKPSMNKAEIAKKVESLASMIEKDANLRQVTEQR
SNLPIASFKDVITSTIKSNQVVLICGETGCGKTTQVPQYLLDHMWGKGETCKIVCTQPRR
ISATSVAERISYERGENVGENIGYKIRLESKGGRHSSIVFCTNGVLLRLLVFNGGNRSKE
VSNRAKDDVYSITHIIVDEIHERDRYSDFMLAIMRDMLPVYPHLRLILMSATLDADRFSQ
YFGGCPIIRVPGFTHPVKSFYLEDVLAILKSTESNHLDFAVSNDPDEDPELTEEDKNTLD
EAMNLAWSNDEFDMLLDLVSSEGAPKIYNYQHSLTGLTPLMVFAAKGRVGDVCMLLSHGA
DCHLKAQDGSTALELAEQENQQEVAQIIKKHMEVALSDLTKQRLLDKYLATVNPGLIDLV
LLEQLLRKICKDSEDGAILVFLPGWEDINRTRGRLLADALFRDNSKFVIISLHSMVPSVE
QRKVFKRPPLGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVS
KASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNSKI
QDFLQKTLDPPVPETIHNAITVLQDIGALSLDEEVTSLGERLGCLSVHPLMSKMLFFAIM
MNCLDPALTLACASDYRDPFTIPMLPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWR
NAKQRGQEARFCSQYFVSSSIMNMLLGMRKQLQTELIRNGFIPEDVSSCSQNARVPGILH
AVLVAGLYPMVARLRPPHKNGKRFVETASGAKVRLHPHSINFKLSFRRTEDCPLFMFDEV
TRGDGGMHIRNCSVVGPLPLLLLATEIAVAPAQSNVDDDADNDVSDDDADEEDSDEDGME
VDNKTGGHGENIMSSPDNSVIVYVDRWLCFVSTAIDVAQIYCLRERLSEAILFKVTHPRE
VLPPVLEASMCTIASILSYDGLSGISFPSEPVDSITSMIQATEIDNSMGGRSRDTGHSPN
SFLKSLMSHNTHQKTPLHNHRNKEHFKGTRKGNGSSNSYDSKPPVGSGSSAMYVPHGPRG
ESFKRQRGSGSKVHW
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagagacagaagaaaggagaagaacaacaacggcaaaaccctaatattgct
gaagctactaggattcgaatatctcaagtactccagcactttcgtgtcaaaaaagatgat
gtgtatacctttgatgccaatctgtcgaatcatgaacgtgctgtggtgcatgaggtttgc
aggaaaatgggtatgaaatccaaaagttctggacgtgggaatctgcgacgtgtttctgtt
tacaaagctaaaaaaggtgtggagaaagtgaaggagagggacaatcaaactaaattgatg
ttttcaaaagagtcaaaaggggttttgcaagatttatttacacgctacccacctgatgat
ggagagtctggagagaaattagttgcaaaacatggtgggaagaatgataaaaagcacgga
aaaagagacgatattttctgcaagccttcgatgaacaaggcagaaattgcaaagaaggtg
gaatcgcttgcatctatgatagagaaggatgcaaacttgagacaggttactgaacagagg
tcaaatcttccaattgcatccttcaaggatgtcattacttccacaataaaatctaaccag
gttgtcctcatatgtggtgaaactggatgtggaaagacaacacaggtgccacaatatctg
ttagaccatatgtggggtaagggtgaaacatgtaaaatagtgtgtactcaacctcgacgt
atctctgctacatcagttgctgagagaatatcttatgaaagaggagaaaatgttggagaa
aatattggatacaagattcggcttgaaagtaaaggtgggaggcactcgtcaattgtgttc
tgcacaaatggggttcttttgagattgttggtctttaatggtggtaataggtcgaaggaa
gtttctaaccgagcaaaggatgatgtttattcaataactcacattattgtggatgaaatt
catgaaagggatcgctactctgatttcatgttagcaattatgagagacatgcttcctgtg
tatccccatcttcgactgatattaatgagtgcgactcttgatgctgatagattttctcaa
tattttggtggctgtccaatcattcgtgtccctgggttcactcatcctgtaaaaagtttc
tatttggaagatgtacttgccatcctgaaatccacagaaagtaatcaccttgactttgct
gtctcaaatgacccagatgaggaccctgagttaacagaggaagataagaatactttagat
gaagctatgaatttggcttggtcaaatgatgagtttgatatgctactagatttggtttct
tctgaaggagccccaaagatctacaattaccagcattctttgactggtctaacaccatta
atggtatttgctgcgaagggtagagtgggtgatgtttgcatgctcctctctcatggtgca
gactgccatttaaaggcccaagatggaagtacagcattagagttggctgaacaagaaaac
cagcaagaagtggctcaaataattaaaaaacacatggaagttgccctttcagacttgaca
aaacaacggctactggataaatatctagcaactgtcaaccccggacttatagatcttgtt
cttttagagcagttactaagaaaaatctgcaaagattcagaagatggagctatccttgtt
tttcttccagggtgggaagacataaatagaactcgggggagattgcttgcagatgcttta
ttcagagataattccaaatttgttataatatctctgcattctatggttccatctgtggag
caaaggaaggtctttaaacggccacctcttggttgtcggaaaattgttctttcaaccaat
attgctgaaaccgccattaccattgatgatgttgtgtatgttatagatagtggtcgaatg
aaagaaaaaagttatgatccttacaataatgtgtcaactcttcaatcatcttgggtttct
aaagcaagtgcgaagcagagagagggccgtgcaggccgatgtcagccaggaatctgttat
catctatattctaaacttcgagctgcttctttgcctgatttccaggttcctgaaattaag
aggatgccaattgaggaactttgtttgcaggtgaagttgcttgatccaaattccaaaatc
caagatttcttgcagaagacattggaccctccagttcctgaaaccatacacaacgcaatc
actgttcttcaagatatcggagctttgtcacttgatgaagaagttacttcacttggcgag
aggctaggttgtctttctgttcatccactaatgagcaagatgcttttctttgccataatg
atgaactgtctagacccagctctgacattggcatgtgcttctgactatagggatccattt
accattcctatgttaccgaatgaaaagaagagagccactgctgctaaatttgagcttgct
tcattgtatggtgggcagagtgatcagctagcagtcatagcagcttttgagtgctggagg
aatgcaaaacagaggggtcaagaagcccggttttgttctcagtatttcgtctcttcaagc
atcatgaacatgctgcttggtatgcgtaagcagcttcagacagaattaattaggaatggg
tttattccagaagatgtctcaagctgtagccagaatgcgcgtgtcccaggcatactacat
gcagtccttgtggctggtttgtatccaatggtggcaaggttgcgtccacctcataaaaat
ggaaaacgatttgtagagacagcaagtggtgctaaagttagattgcacccacattccata
aatttcaaattatcctttcggagaactgaggattgtccattatttatgtttgatgaggtt
acccgaggggatgggggtatgcacataagaaattgtagtgttgttgggccactgccactg
ctgctgcttgcgacagagattgctgtggctcctgcacaaagtaatgtggatgatgatgca
gataatgatgtgagtgatgatgatgctgatgaagaggacagtgatgaggatggtatggag
gtggataataagacaggaggacatggagagaatattatgtcatctcctgataattcagtt
atagtttatgtggatcggtggctttgttttgtatcaacagcgattgatgttgcccaaatc
tactgcctaagagaacgattatcagaagcgatcttattcaaagtaacacatccccgggaa
gttcttcctccagttcttgaggcttctatgtgcacaatagcctcaatactgtcttatgat
ggactttctggaatctcatttccatcagaacctgtggattcgatcacttcgatgatacaa
gcaaccgagattgataattccatgggcgggagaagtagagatacaggtcatagtccaaat
agctttcttaagtcacttatgagccacaacacccaccaaaaaacacctttgcacaatcac
agaaacaaggaacatttcaaaggaacaagaaaaggaaatggatcatcaaacagttatgat
agtaagccgccagtagggtctggttcttcagccatgtacgttccacatggtcctagggga
gagtctttcaagaggcaacgcgggagtgggtctaaagtgcactggtaa
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