Mangifera indica (mango): 123216120
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Entry
123216120 CDS
T07684
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
minc
Mangifera indica (mango)
Pathway
minc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123216120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123216120
04121 Ubiquitin system [BR:
minc04121
]
123216120
03036 Chromosome and associated proteins [BR:
minc03036
]
123216120
03400 DNA repair and recombination proteins [BR:
minc03400
]
123216120
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
123216120
Ubiquitin system [BR:
minc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123216120
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
123216120
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
123216120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-RING_UBOX
zf-C3HC4_2
BRCT_2
zf-C3HC4
zf-RING_6
zf-RING_5
PHD_NSD
zf-C3HC4_3
zf-RING_2
zf-HC5HC2H_2
zf-C3HC4_4
Prok-RING_4
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
123216120
NCBI-ProteinID:
XP_044492419
LinkDB
All DBs
Position
5:14239440..14244192
Genome browser
AA seq
683 aa
AA seq
DB search
MADSTKTSLRVLNPWVLHVQKLGLELKCPLCLSLFTRPLLLPCDHIFCNSCIPRSPQFGS
ECPVCKSECSEADLRPLHFVENLVTIFKGLDAFSGANLSHCPSVAGRVLDQCPPQEDNSS
GQSVSANKLGQVTYVRQIASSNGQGPVSSQPSTQIQGEGIQECGAGKTDMNCVEQTLLGS
PPSFDDIKGSDNESSDQGSEHSPETYAANRPIKKSFDGRKTLEHGFSASEVEDHLRDSKR
QKKLNYSCEDMCVKSAGNIQSMVLSSERMVASNPVLEPKSGVPVVGATLPKISDSSHALK
FICGFCKTSKVSEATGSMLHYANGKQVMGDDAACSNVIHVHSKCIDWAPQVYYDGEMVKN
LKAELARGAQLKCNACGKKGAALGCYMKSCRRSYHFPCALEIPKCRWDNEDFLLLCPMHS
SVKFPNEKSRNCVVRKDPVPLQVTPQQCNFWSASPYKAKKWVLCGSALSTDEKILLVRFG
SKFGVTVSKVWRPDATHVIAATDEKGACMRTLKVLMAIANGCWVLKIDWIKACMEAMRPV
YEEPYEVSLDNHGCQDGPRTGRLRVLEKASKLFDGLSFFFSGDFIPAFKEDLQSLVIGAG
GLVWKSEIELLAQERNDKGSHSKILIVYNLDSPHGSQLGEEVSIIWKRLNEAQELANKVD
SQVIGHTWLLESIAAHKLQPLVS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctactaagacgagcctccgagtcttaaacccgtgggtccttcatgttcag
aagcttggtctcgaactcaaatgccctctctgcttaagcctatttactcggccattattg
ctgccttgtgatcacatattttgcaattcatgtatacccagatcaccacagtttggttca
gaatgccctgtttgtaaatctgaatgttctgaagcagacttaaggcctttgcattttgtg
gaaaatttagtgacaatctttaaaggattagatgctttttctggggccaatctgagtcat
tgtccttctgttgctgggagggttttggaccaatgcccacctcaagaggataattcaagt
ggccaatctgtgtcagcaaataagctaggtcaagttacatatgtgagacagattgcatct
agtaatggtcaaggtcctgtatcatcacaaccaagtacccagatacagggtgaaggcatc
caagagtgtggagctgggaaaactgatatgaattgtgtggaacagacattgcttggcagt
cccccttcatttgatgatattaaggggtcagataatgaaagtagtgatcagggcagtgag
catagtcctgaaacttatgcagccaataggccaatcaagaaaagttttgatggtaggaaa
acgctggaacatgggttttctgcttcagaagttgaagatcatttgagggactccaagaga
caaaagaaattgaactatagttgtgaggatatgtgtgtgaaaagtgctggtaatattcaa
tcaatggttttgtcaagtgaaagaatggtggcttcaaatcctgtattggaacctaaatct
ggagtacctgttgtgggtgcaacactgcctaaaatttcagatagctctcatgcattaaaa
tttatctgtggattttgcaagaccagtaaagtctcagaggcaactggctccatgttgcat
tatgctaatgggaagcaagtaatgggagatgatgcagcctgttcaaatgttattcatgtt
cacagtaaatgcattgactgggcaccacaagtatattatgatggagagatggttaagaat
ttgaaagcagaattggctaggggtgcacagcttaaatgcaatgcatgtggcaaaaagggt
gcagcattaggctgctacatgaaatcttgtcggagaagctatcattttccctgtgctttg
gaaattcccaaatgccgatgggataatgaagactttcttctgctctgtccaatgcactct
tcagtcaaatttccaaatgagaagtccagaaactgtgttgtaaggaaggatcctgtgcca
ttgcaagtaactccacagcagtgcaacttttggtctgcctcgccttataaagcaaagaag
tgggttttatgtggatctgctttgtctactgatgaaaagattcttttggtcaggtttggg
agcaagtttggtgtaactgtgtccaaggtctggaggccagatgccacacatgtgattgca
gccacagatgaaaagggtgcatgcatgaggacattgaaagttctcatggccattgcgaat
ggttgttgggttcttaagattgactggataaaagcttgcatggaagccatgcgtcctgta
tatgaagagccttatgaagttagtcttgacaatcacggatgtcaagatggcccaagaact
ggcagactcagggtgttggaaaaagcatcaaagctctttgatggcttaagtttctttttt
tctggtgacttcattccggcttttaaggaagatctccaaagtttggttattggtgcggga
ggactagtttggaagagtgagattgaattgctggcacaagaaagaaacgacaagggatct
cattcaaagatactaattgtctataaccttgattcgccacatggatcccaattaggagaa
gaggtttcaataatttggaagagactaaatgaagcacaggaattggcaaacaaagttgac
tcccaggtgattggtcacacttggcttttagaatcaattgctgcacataagttgcagcct
cttgtcagctga
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