Mangifera indica (mango): 123216444
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Entry
123216444 CDS
T07684
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
minc
Mangifera indica (mango)
Pathway
minc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123216444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
minc04131
]
123216444
Membrane trafficking [BR:
minc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123216444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_EML_2
TPR_VPS8_2
Beta-prop_EML
WD40
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_Prp19
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
123216444
NCBI-ProteinID:
XP_044492783
LinkDB
All DBs
Position
5:complement(18141316..18152624)
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AA seq
1923 aa
AA seq
DB search
MELDIDSFLNSNTSSDSDDDSNSVPHRTLDEILNDTDSSSPPSSPVSNSHLSVPKSQHQD
DSISSQDFTKPPKTSSFTRHKTNESAADPLWRTSSASARQLPSLFGGVRSNAKPGAALAA
AAAASRPVPTPHAAALKSLRAGSGMLQKVLDVDDHEIVSVSSNEISVSSEKLEEDDEKMG
DFQFAQVSVSEESTDLPCNKDEDTKLELMISDADEEHLNASSNLHTEQLVDSSSLIDAED
LTLSKKSTVDGSEDVNDIDRNRNVTSVTGDDDSSENNVSSSPESAKDGQMEEVQISEMEN
LDNGLSSCKDDAVDTGGGDDASAISDISELVEERIEQLESEIISRRAGKKTRPSMKPLEL
AEELEKKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVNANNTITQTIGSQAFRRDH
GSPQVLAVHLNFIAIGMSKGVIIVLPSKYSAHHHENMDSKMLMLGSLGDRSHAPVTSMCF
NQQGDLLLAGYGDGHIVVWDVQKASAAKVITGEHTAPVVHTLFLGQDSQVTRQFKAVTGD
CKGLVLLHAFSVVPLLNRFSIKTQCLLDGQRTGVVLSASPLLLDESCGGALPSSHSQGNS
AASTSSIGSMMGGVVGADAGWKLFNEGSSLVEEGVVIFVTHQTALVVRLTPTIEVYAQLS
RPEGVREGSIPYTAWKCMMPSRASSTESTSAEATERVSLLALAWDRKVQVAKLVKSELKV
YGKWSIDSAAVGVAWLDDQMLVILTVTRQLYLFAKDGTVIHQTSFSVDGSIGDDLIGYHT
HFINVFGNPEKSYHNCVAIRGASIYVLGPMHLVVSRLLPWKERIQVLRKAGDWMGALNMA
MTLYDGQAHGVIDLPRTLDAVQEVIMPYLVELLLSYVDEVFSYISVAFCNQIEKLGQLDD
TQSRSSSVHTEIKEQFTRVGGVAVEFCVHIRRTDILFEEIFSKFVAVHHKDTFLELLEPY
ILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVKLCREHALYGAL
VYLFNKGLDDFRAPLEELLAVLRNCLRENAAALGYRMLVYLKYCFQGLAFPPGHGTLPAT
RLPSLRTELLQFLLEESDAQNSQAASSLSIDGLYLNLYHLLELDTEATLDVLRYAFIEHP
TPKSDIASHDSADANMEANKEQNSMDENQNVFVQNTVNALVHVLDKVISQIDGPSGNDDS
GSVEMWPSQKDIGHLFEFIAYYVACGKANVSKSVLSQILRYLTSEKNASQSNPTHSVETS
RKREKQLLALLEVVPETDWNASDVLHLCESAQFHQVCGLIHTIRHHYLAALDSYMKDFDE
PIHAFSFINDTLVQLTDNEHVVFRSAVISRIPELVGLSREGTFFLVIDQFSNEASQILSE
LHSHPKSLFLYLKTVVEVHLYGTLNLSYLRKDDGMFVANGKRVKFHSRGLEAYMERISDF
PKLLRSNPVHVTDDMIELYLELLCQYERESVLKFLETFDSYRVEHCLRLCQEYGIIDAAA
FLLERVGDVGSALLLTLSGLDDKFLRLETAVGSVVSGVFKGSINMEHFTTVLNMEEVNDL
RNILHACIGLCQRNTPRLNPEESETLWFKLLDSFCQPLVGDERASERENGSKMLEEPLCL
PEDEEACVIKWKISKSHKGAHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSDNGTQEF
GDFKLTILGMLGTYSFERRILDTAKSLIEDDTFYTMSVLKKGASHGYAPRSLFCCICNCL
LTKNSSSFRIRVFNCGHATHIQCELLENESSRVSSSGCPLCMPKKNTQRSRNKSVVAENG
LVSKISSRTQPASGTTLHSHEGDTLENSYGIQLLSRFEILNNLQKDQKLVQIENMPQLRL
APPAIYHEKVKKGTDLLTGENSSSLANIEKSSKKRQTRDLKLKGSSLRFPKSSIFGKEKT
GRW
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atggaactcgacattgactcctttcttaactcaaacacctcctccgattctgacgacgat
tccaactcagttcctcaccgtaccctcgacgaaattctcaacgacaccgattcatcctcc
ccaccatcatcacctgtgtccaactcacatctttccgtccccaaatcacagcaccaagat
gattccatttcttcacaagatttcacaaaaccaccaaaaactagttccttcactcgccac
aaaactaacgaatcagcagctgatcccttatggaggacttcttctgcatctgctaggcaa
ttgccatccttgttcgggggagtgcgttccaacgctaaaccgggcgcggcgcttgcggcg
gctgctgccgcctcgcgccctgtgcccactccacatgctgccgccttaaagtcgctgaga
gcagggagtgggatgctacagaaggttctggatgttgacgatcacgagattgtttctgtt
tcttcaaatgaaattagcgtgtccagcgagaaattggaagaagatgacgagaaaatgggt
gattttcaatttgcccaagtaagtgttagcgaagaatcaacagatttaccttgcaataaa
gatgaagatactaaattagaattaatgattagtgatgctgatgaagaacacttaaatgca
agttctaatctgcatactgaacaactggttgattcctcgtcacttattgatgcggaggat
ttgactttgagtaaaaaatctacagttgatggttcggaagatgttaatgatatagataga
aatagaaatgttacctctgttactggtgatgatgattccagtgaaaataatgtttcttct
tcacctgagtcggctaaagatggacaaatggaggaggttcagatatcggagatggagaat
ttggacaatggtctgtctagctgtaaggatgatgcggtggacactggtggtggtgatgat
gccagtgctataagtgacatttcggagcttgtagaagaaagaattgagcagttggagagc
gagataattagtagaagagctggaaagaaaacacggccttccatgaagcctcttgaattg
gcagaggaactcgaaaagaagcaggcatctactggtctgcattgggaggagggtgcggct
gcccaacctatgagacttgaaggtgtaaggagagggtcaaccacattgggatattttgat
gttaatgccaataacactattacgcagactattggatcccaggcattcaggcgtgatcat
ggttccccacaagtcttggcagtgcatcttaattttattgctattggaatgtccaaaggg
gtcatcattgttcttcccagtaaatactctgctcatcatcatgaaaacatggattcaaag
atgcttatgcttggttcacttggggatcgatctcatgccccagtgacttcaatgtgcttc
aaccagcaaggtgatctgctcttagctggttatggtgatggtcatattgtagtttgggat
gtacagaaggcatctgcagcaaaagttattactggagagcacactgcaccagtagttcat
acattatttctagggcaggattctcaagtcactcgtcaatttaaagcagttactggtgat
tgtaagggcctggttctgttacatgctttctcagtggttcccttgcttaataggttctct
atcaagactcagtgtctccttgatggacaaagaacgggtgtagtactatcagcttctcct
cttcttttagatgaatcttgtggaggtgcattgccatcatctcactctcagggaaactct
gcggcttcaaccagcagtattggtagcatgatgggaggtgttgttggagcagatgcaggt
tggaaactcttcaatgaggggtcctctttggttgaagaaggtgtggtcatatttgtcacc
catcaaactgcattggtggtaaggctcactcccactatagaagtatatgctcaactttct
aggccagaaggtgttcgggaaggttccataccatacactgcttggaaatgtatgatgcca
tctcgtgcttcttcaacagagagtacttctgcagaagcaacagagagagtttcattgctt
gcacttgcttgggatcggaaagttcaggttgcaaagttggtcaaatcagagctaaaagta
tatggaaagtggtccattgacagtgcagctgttggtgttgcctggttggatgatcagatg
cttgtgattcttacagtgacaagacagctttatttgtttgctaaagatggaactgtaatt
caccaaacaagtttttctgtagatggttctataggagatgatctgattggatatcatacc
cacttcattaatgtttttgggaaccctgagaaatcctatcacaactgtgtggctataaga
ggagcttctatatatgtactaggaccgatgcatcttgtagtttcccgccttcttccatgg
aaggagcggattcaggttctccgaaaagcaggtgactggatgggtgccttaaacatggct
atgacgctttatgatggccaagctcatggtgttattgaccttcctagaaccctagatgct
gtacaggaggtcataatgccttatttggttgagttgttactatcatatgtggatgaagta
ttttcttatatatcagtggcattttgcaaccaaattgaaaaactaggacaactagacgat
acacaaagtagaagtagttctgtgcacactgaaataaaggagcagttcacccgtgttggt
ggtgtagcagtcgaattctgtgtccatatcagaaggactgacatcctttttgaagaaatt
ttctctaaatttgtggctgttcaccacaaagatacatttttggagcttttggagccatat
attttgaaggacatgcttggatctctacctcctgagatcatgcaagcactggtagagcat
tatagcagcaaagggtggttacagcgagttgaacaatgtgtccttcatatggatatctct
tctttggacttcaatcaggttgttaagttatgccgggagcatgcactgtatggtgctttg
gtatatcttttcaacaaaggattggatgattttcgggctcctttggaggagctgttagca
gttttacgaaattgtctaagagagaatgctgctgcccttggctacaggatgcttgtgtat
ctgaagtactgctttcaaggtcttgcttttccaccaggacatggaactcttcctgccaca
cgcttgccatctcttagaacagaactgttgcaatttttattggaggaatctgatgctcag
aattcacaagcagcttcaagcttatctattgatggattatatctgaacctgtatcatctc
ttggaattagataccgaagctaccttagatgttctaagatatgctttcatagaacatcca
actccaaaatctgacattgcttcacatgattcagctgatgcgaatatggaggctaacaag
gaacagaattcaatggatgagaatcagaatgtgtttgttcagaatactgtaaatgctctt
gttcatgttcttgacaaggttatctcccaaatagatgggccttctggaaatgatgatagt
ggatcagttgaaatgtggccttctcagaaagacataggtcatctgtttgagttcattgca
tactatgttgcatgtggaaaagctaatgtctcaaaaagtgtattgagtcagattttgcgc
tacttgacgtcagaaaagaatgcatcacaaagtaatcccacacatagtgttgaaacttct
agaaaaagagaaaagcagctgctggccctactagaagtagtgcctgagactgattggaat
gcatctgatgtgttacacttatgtgaaagcgcacagtttcatcaggtttgtggcttaatt
catacaatcagacaccattatcttgctgctctagatagctatatgaaagattttgatgaa
ccaatccatgccttctctttcatcaatgatacgttagttcagctcactgacaacgaacat
gtagtttttcgttcagcagtcatctctcggattccagagctggttggcttaagccgggaa
ggcacattcttcttagtcattgatcaattcagtaatgaagcttcacaaatcctctctgaa
cttcattctcatccaaaaagtcttttcctttatttgaagacagttgtagaggttcactta
tatggaaccctgaacttatcctatttaagaaaagacgatggtatgtttgttgctaatgga
aaaagggtgaagtttcattcaagaggactggaggcttacatggaaagaatctctgatttc
cctaaattgcttcgcagcaaccctgttcatgttactgatgatatgattgagctttacctg
gagttattatgtcagtatgaacgtgaatcagttctcaagtttctggaaacttttgatagc
tatcgagtggaacactgtttacgcctgtgccaggaatatgggatcatagatgcagccgca
tttttattggaaagggttggtgatgttggaagtgctcttttacttacgctttcagggctt
gatgataaatttcttaggcttgaaactgctgtgggaagcgtagtttctggtgtgtttaag
ggatcaatcaacatggagcatttcaccacagttttaaacatggaggaggtgaatgacttg
cgcaatatattgcatgcctgtattgggttgtgtcagcgaaacactcctcgtttgaatccc
gaggagtcagaaacactctggtttaaattgcttgattcgttttgtcagcctcttgtgggt
gatgaaagggcatctgaaagagaaaatggctcaaaaatgctggaggagccattgtgcttg
ccagaggatgaagaagcatgcgttatcaagtggaaaatttcaaagtcccataagggtgct
catatcttaagaaaattgttctcacagttcattaaagagattgttgaaggaatgatagga
tatgttcatcttccaaccataatgtcaaaactcctatctgacaatggtacccaggaattt
ggtgactttaaacttaccatactggggatgctgggaacatatagttttgaaagaagaatt
ctggatactgccaagtctttgatagaagatgatacattctataccatgagtgtactcaag
aagggtgcctctcacggctatgcccctcggagtttattttgttgtatatgcaactgtctt
ctcacaaagaattcttctagttttcgcattcgagtgtttaattgtggtcatgcaactcat
attcaatgcgaacttttggaaaatgaatcaagtagagtttcctcatctggatgccctctt
tgcatgcctaagaagaatactcagagatccagaaacaaatcagttgttgctgagaatggt
ctggtgagtaagatttcatcaagaacccagccagcatctggaaccacactacactcgcat
gaaggtgatacattagagaactcctatggaattcagctattatcacggtttgagatatta
aataatcttcagaaggaccagaaattagtgcagatagaaaatatgcctcagctaaggctt
gctccaccagctatttatcatgaaaaggtcaaaaagggaactgatcttttaaccggagaa
aatagcagctctcttgcaaacatagaaaaatcaagtaaaaaaagacaaacgagggaccta
aaattgaagggatcgtctcttcgtttcccaaaatcaagtatattcggcaaggagaagaca
ggcaggtggtga
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integrated database retrieval system
