Mangifera indica (mango): 123216481
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Entry
123216481 CDS
T07684
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123216481
03015 mRNA surveillance pathway
123216481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123216481
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123216481
5.6.2.5 RNA 5'-3' helicase
123216481
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123216481
mRNA cycle factors
Common to processing body (P body) and stress granule
123216481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
AAA_16
PhoH
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
123216481
NCBI-ProteinID:
XP_044492824
LinkDB
All DBs
Position
5:complement(16151039..16164465)
Genome browser
AA seq
1412 aa
AA seq
DB search
MSLPIQVAEKPRSTLQPYAWYRIPLTTRQTHASLPNYVGACFERCFKRLNTLCITHTRVL
FLCLLTHHLNDNTYPNPPALTTTYTHTVRFIFTFSLSPSHIPSTKTLTLIFFLKIISTPF
CSFCSMDSQQNNLFETASQPDTGTDAYTFLEFNTQGESEFDAYPEFRSPVSWPTPSDSLA
VDPASTSTPTTPTTPSDSRGVSSSSDHHLHHHHNHHRHPDSLAATSSPSKRGTNNNSNNN
NNTNTSSSQIVDGLAALSFEETGDDGEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSC
RKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAK
TESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQ
QINKVEELWKTNPDATLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMM
KESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGH
VIKLTAQEEVALELRASQGVPVDISHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYI
YHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVT
SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTL
HYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG
AGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAG
LAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPW
PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ
RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRL
NVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKI
YNDRRLYVGGGPGIVSNDISSSSPNADRRGGRGRGSYMPPGPPNGSHKPGVHPGGFPMPR
VPLPPFQGGPPSQPYAIPTRGPVHGPVGAVPHVPQPGSRGFGTGRGNAGAPIGSHLQHQQ
ATQQTIGTVGSTFNFPSLENPNSQPSVGGPLTQPGFVNNMPVQGASQTFRDGFSIGGMSQ
DFLGDDFKSQGSHVPYNVADFSTQASQSGYTVDYVTQGAQSGFPGNFLNQNSQAGYSRFG
SGNDFMSQDYMAHGSQGLFTQVGFNDRTQDDASQSHFGVTNSNQLQSQGLMNSLYSQPFA
HYNTQPLNMHASSQQQPQPGQGSQNQKVHYNS
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttcccatccaagtggccgaaaaaccgcgctccacactccagccatatgcttgg
tatcgaatccccctcacaacaagacagacccacgcttctctgcccaattacgtcggcgcg
tgttttgagcgttgttttaaacgcttgaataccctctgtatcactcacacgcgcgttctg
tttctctgtcttctcactcaccaccttaacgacaacacatacccaaaccctcccgcttta
acaacaacatacactcacacagttcgcttcatttttactttctctctctccccctctcat
attccttcaacaaaaaccctaaccctaattttctttctaaaaataatatccacacctttt
tgttcgttttgttccatggattctcagcaaaacaaccttttcgaaacggcatcacagccc
gatacgggaaccgacgcttacacctttctcgaattcaacacacaaggcgagtccgagttt
gacgcgtatccagaatttcgttcgccggtatcctggcccacaccttccgattctctcgca
gtggaccccgcttccacgtcgactcctaccaccccaacgaccccttccgattcacgcggt
gtatcttcctcctccgatcaccacctccatcaccaccacaatcaccacaggcaccccgat
tctcttgctgccacgtcatctccttctaaaagaggaacgaacaataacagtaataacaac
aataacactaatacaagtagtagtcagattgtggacgggcttgctgcgttgagtttcgag
gagacgggcgatgacggggaggggttcgagtatgggaaagcagatttcacggagcacgct
tgtcggtactgtggggtctcgaacccagcgtgtgttgtaaggtgcaatgtcccgtcgtgt
cgtaagtggttctgtaattccagaggcaacacctccggctcacacatcgtcaatcacctg
gttcgagcaaaacacaaggaagtctgtcttcataaagacagtcctctgggagagactatc
cttgaatgctacaactgtggatgccgaaatgtattccttcttggctttatatcagcaaag
acggagagtgttgttgttcttctctgtagggaaccttgcttgaatgtaaatgctttgaag
gacatgaattgggatctcagtcagtggtgccccttgattgatgataggtgtttcttgcaa
tggcttgttaaggtcccatctgaacaggagcagttgagggcacgtcagatcagtgctcaa
caaattaacaaggtagaagaactttggaagacaaatcctgatgctacccttgaagatctc
gagaagcctggtgtggatgatgaacctcaaccggtggccttgaagtatgaagatgcatat
cagtatcaaaatgtatttgcaccacttatcaagcttgaagctgactatgataaaatgatg
aaagaatcccaaagcaaggacaatgtcacaatcagatgggatatcggtcttaacaagaaa
cgtattgcatattttgtgtttccaaaggaagacaatgagttacgtttagtacctggcgat
gagttgcggttgcgttattcgggggatgcagctcatccagcatggcagtcagttgggcat
gtgatcaagctaactgcacaagaggaggttgcacttgagcttcgtgcgagtcagggggtt
ccggttgatataagtcatggattcagtgtcgattttgtgtggaagagcacaagctttgat
aggatgcaaggggcgatgaaaacttttgctgttgatgaaacaagtgtcagtgggtatatt
taccaccacttgttgggccatgaggttgaggttcagatggttcgcaatacactgcctcgc
cgttttggtgcacctggtcttccagagctgaatgcatcacaagtttttgccgtaaagagt
gtcctccagaggcctataagtttaattcaaggtccacctggcacagggaaaactgtcact
tctgcagctattgtataccacatggccaaacagggccaagggcaggttttggtgtgcgca
ccaagcaatgttgctgttgaccagctagctgaaaagataagtgccactggattaaaggtt
gttagactttgtgccaaatcaagggaagctgtgagctctccagttgagcatttaaccctt
cattaccaggttcgacatcttgacacatctgagaagagtgaacttcacaagttacaacaa
ttgaaagatgaacaaggagagttgtcgagcagtgatgagaaaaaatacaaggcacttaag
cgagcaacagagagggaaatttcacagagtgctgatgtcatttgttgcacatgtgttgga
gctggagatcctcgattggcaaattttagattccgccaggtacttattgatgagtctact
caggcaaccgaacctgagtgtcttattcctttggttcttggggcaaaacaggttgttctt
gtcggtgatcattgccaactgggtccagtcattatgtgcaagaaagcagctcgtgctggg
cttgctcagtctctttttgaacgccttgttttacttggtttaaaaccaattagattacag
gttcaataccgcatgcacccatctctgtctgaatttccttccaatagcttctatgaaggc
actctacaaaatggtgtgaccgtcaatgagaggcaatcaacaggaattgattttccgtgg
cctgttccgaatcgtcccatgtttttttatgtacagatgggacaagaagagattagtgcc
agtggaacatcctatttaaatcgaactgaagctgcaaatgttgagaaaattgtaactact
ttcttaaggagcggggtggtccctagccagattggggtgataacaccatatgagggacag
agagcatatattgtgaactatatgtcaaggaatggtgctctcagacaacaattgtacaag
gaaatagaggtagcaagtgttgattcatttcaaggaagagagaaagattacataattttg
tcttgtgtgaggagtaatgaacatcagggtattggattccttaatgatccccgtaggctg
aatgttgctctaacacgtgctcgatatggtattgttattctgggaaaccctaaagttttg
agcaaacagccactttggaatggtttattgacacactacaaggagcacgagtgcttggtt
gaggggcctctaaataacttaaagcagagtatggtccaatttcagaagcccaaaaagatt
tacaatgatcgaagactttacgttggtggtgggcctggaattgtgtctaatgacatctca
tcatctagcccaaatgctgatagaagaggtggtcgtggtagggggtcatatatgcctcct
ggtcctcctaatggttctcataaacctggagtgcatcctggaggttttcctatgcctcgt
gtgccccttccaccgtttcagggtggtcccccttctcaaccatatgctattccaacacgt
ggacctgtacatggaccagttggagctgttcctcatgtacctcaaccaggaagtcggggt
tttgggactgggcggggtaatgctggtgctccaattggcagtcatctccagcaccagcaa
gccactcagcaaacgattggaactgttgggtctactttcaactttccatctcttgagaat
ccaaatagccaaccatccgtgggtggtcctttgacacaacctggatttgttaataatatg
ccagttcaaggggctagtcaaacctttcgcgatggattttccattggaggcatgtctcag
gatttcttgggtgatgacttcaaaagccagggatcacatgttccctataatgttgctgac
ttctctactcaggcttcacaaagtggctatactgttgactatgttacacaaggagcacaa
agtggatttcctggaaacttcttaaaccagaattctcaagctggatattctcgatttggt
tctgggaatgatttcatgtctcaggactacatggcacatggatcacaaggtttgtttact
caagttggctttaatgaccgcacacaagatgatgcatctcagagccacttcggtgtaaca
aattccaatcaacttcagtctcagggattgatgaattctctctattcccagccctttgcc
cactacaacactcaaccgctaaatatgcatgcttcttcacagcagcagcctcaaccgggc
cagggctcacaaaaccagaaagtccactataatagttga
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