Mangifera indica (mango): 123216572
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Entry
123216572 CDS
T07684
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123216572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123216572
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123216572
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123216572
Complex B
123216572
Complex C
U2 SnRNP specific factors
123216572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123216572
NCBI-ProteinID:
XP_044492962
LinkDB
All DBs
Position
5:17395557..17400848
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AA seq
770 aa
AA seq
DB search
MSKRKFGFEGFNINRQTTYSFEQSQAPQRLYVPPSSRHSHDNYEDTDLDNIDYDDNDAVK
DTNDNGNGSGNDEVDPLDAFMEGIHEEMKAAPPPKPKEKLERYKDDDDEDDPMESFLRAK
KDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVVEKKRIEPIPALDHSS
IDYEPFSKDFYEESASISEMTEHEAVEYRKSLAIRVSGFDVPRPIKTFNDCGFSTQLMHA
ISKQGYERPTSIQCQALPIVLSGSDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGP
IGVICAPTRELAHQIYLETKKFAKSHGLRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL
IDMLKMKALTMLRATYLVIDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILTDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK
KASVDEIETQLVQTGFKVAALHGDKDQASRMEILQKFKSGIYHVLVATDVAARGLDIKSI
KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSV
ELMDLAMKDGRFRSKRDARKGGGKKGKGKGGAGRGVRGVDFGLGIGYNPESTNTSHQNVP
SRSAAVNSLRTGVMAQFKSSFVAASSNPQVQGVNNNSSAYANKRPALPGFVSGGSIGGDI
NRAQVPSSFSTTPVSGVNTSGQNSRENGNQNSESSRDRPRERRRPSGWDC
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgaaggattcaacattaaccgccaaacaacatatagc
ttcgagcagtctcaagctccgcaacgtctctacgtcccgccttcatctcgccacagccac
gataattatgaagatacggaccttgacaatatcgattacgacgataatgatgctgtcaag
gacaccaacgacaacggtaatggttctggaaatgacgaagttgatcctctggatgccttc
atggagggtatacacgaagagatgaaagccgcgccaccccccaagcccaaggagaaatta
gagagatataaagatgatgatgatgaggatgatccgatggagagctttttgagagcgaag
aaagacgtggggctcacattggctgccgatgcgttgcgtgcagggtacgattcagatgag
gaggtttatgcggcagccaaagccgtggatgctgggatgttggagtacgattcagatgat
aacccgatagtggttgagaagaaaagaatcgagccgattccggcgctggatcatagttcc
atcgattatgagccgtttagtaaggatttttatgaggaaagtgcatctatttcagagatg
actgagcatgaggcagtagagtacagaaagagtctagctattcgggtttcgggttttgat
gttccaaggcctattaagacatttaatgactgtggtttttcaactcaactaatgcatgct
atatcaaagcaagggtatgaaaggcccacatcaatacagtgccaagctttaccaattgta
ctttctggaagtgatatcattggcatagctaaaactggttctggtaaaactgcttcattt
gtccttcccatgattgttcatattatggatcagcctgaacttcagaaggaggagggtcca
attggggtgatatgtgctcctacaagggaattagcacatcaaatttatcttgagactaag
aaatttgcaaaatcacatgggcttcgtgtctctgcagtttatggtggaatgtccaaactt
gatcagttcaaagaactgaaggcaggatgtgagattgttattgctacccctgggagacta
atagatatgctaaagatgaaggcacttacaatgttgagagcaacttacctggtgattgat
gaggctgatcggatgtttgaccttggatttgagccacaaataaggtctatagttggtcag
atcaggccagaccgacagacactacttttctcagctacaatgcctcgtaaagttgaaaag
ttagctcgggaaattctcacggatcctgttagagttactgttggggaggtaggaatggca
aatgaggatatcactcaggtggttcatgtaattccttctgatgctgaaaagttgccttgg
cttcttgagaagctacctggaatgattgatgatggtgatgtcctagtatttgcttctaaa
aaggcaagtgtggatgaaattgaaactcagttggttcaaacaggatttaaagttgcagct
cttcatggtgataaagaccaggcatctagaatggagatattgcaaaaattcaaatctggg
atctaccatgttcttgttgcaactgatgttgccgcccgtggtcttgatattaagtcaatt
aagtcagtggtgaactttgatattgcaagggacatggacatgcatgttcatcgtattggt
agaacaggccgtgctggtgacaaagatgggactgcttacactctcataactcagaaggag
gcacgttttgctggtgaattggttaatagcttgattgctgctggacagaatgtctcagtg
gaactgatggatcttgctatgaaggatgggaggttcaggtccaagcgagatgcaagaaaa
ggaggtgggaaaaagggtaaaggtaagggtggtgctggtcgaggtgtgcgtggagttgat
tttggtctgggtataggatataatcctgaatccactaatacttcacatcagaatgttcca
agtcgatctgctgccgttaattctctgaggactggagtgatggcacaattcaagagtagc
tttgttgctgcctcatcaaacccacaagttcagggtgtgaataacaattctagtgcatat
gccaacaaaagaccagcattacctggatttgtgtctggtggttcaattggtggagatatt
aatagagctcaagtgcccagttcatttagtactactcctgtgtcaggagtaaacacctct
ggtcagaattctagagaaaatggcaatcagaactcagagagttccagagatagacctaga
gaacggcggaggccctctggttgggactgttaa
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