Mangifera indica (mango): 123217056
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Entry
123217056 CDS
T07684
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123217056
09122 Translation
03013 Nucleocytoplasmic transport
123217056
03015 mRNA surveillance pathway
123217056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123217056
03041 Spliceosome [BR:
minc03041
]
123217056
03009 Ribosome biogenesis [BR:
minc03009
]
123217056
03012 Translation factors [BR:
minc03012
]
123217056
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123217056
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123217056
mRNA cycle factors
Stress granule specific factors
123217056
Spliceosome [BR:
minc03041
]
Complex C
Other components
EJC/TREX
123217056
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
90S particles
Helicases
123217056
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
eIF-4
123217056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
123217056
NCBI-ProteinID:
XP_044493740
LinkDB
All DBs
Position
5:complement(10852603..10855957)
Genome browser
AA seq
412 aa
AA seq
DB search
MAAATAMQTSRGGGLRRGAGGMEEDKMVFETTEGVEAITSFDGMGIKDDLLRGIYQYGFE
KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELA
SQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLENGVHIVSGTPGRVCDMIKRRTLRTR
AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI
LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG
YNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE
LYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctacagcgatgcagacgagccgcggtggcgggttgagaaggggagctggc
gggatggaggaagacaagatggtgtttgaaacgacggaaggagtggaggcaatcacgagt
tttgatgggatgggaataaaggacgatctgttgcgtggaatttatcagtatggattcgag
aagccgtcggccattcagcagagggcggtcatgcctataatcaagggcagagatgtaatt
gcacaggcccagtctggtaccggcaagacctctatgattgctctcactgtttgccagatg
gtcgacacttcttctagagaggtccaggcattgattttgtcacctacgagggaattggcg
tctcagacggagaaagtgatactggcaattggtgatttcataaatatacaagcccatgct
tgcattgggggcaaaagtgtcggtgaagatattagaaagttagagaatggagttcatatt
gtatctggaactccgggcagggtctgtgatatgatcaagaggaggacattgcgtactaga
gctattaaattattagtcctagatgaatctgatgagatgctgagcagagggttcaaggat
caaatttatgatgtgtaccgatatcttccaccagaccttcaggttgtcttaatatctgct
accctacctcatgaaatcttggagatgacaaccaagtttatgacagatcctgtaaagatt
cttgtgaagcgtgatgaattgactttggagggaatcaagcaattttttgtggcagtggaa
agagaagagtggaagtttgacacactctgtgatctttatgataccctgacaattacacaa
gctgttattttctgcaacacaaaacgaaaggtggattggctaactgagaagatgcggggc
tacaactttactgtctcatcaatgcatggagacatgcctcagaaagaaagagatgcaatt
atggcagaatttcgttctggtactacccgtgtccttattacgacagatgtttgggctcga
gggcttgatgttcaacaggtttctcttgtgatcaattatgaccttccaaacaatcgtgag
ctctatatccaccgtattggacgctctggtcgttttggacgcaagggtgtggctataaat
tttgtgaaaaatgatgatatcaagattcttagagatattgagcagtattacagtacacag
attgatgagatgccgatgaatgttgctgatctgatataa
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