Mangifera indica (mango): 123217131
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Entry
123217131 CDS
T07684
Name
(RefSeq) protein CHROMATIN REMODELING 8-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
minc
Mangifera indica (mango)
Pathway
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
123217131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
minc03036
]
123217131
03400 DNA repair and recombination proteins [BR:
minc03400
]
123217131
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
123217131
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
123217131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
123217131
NCBI-ProteinID:
XP_044493848
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All DBs
Position
5:complement(14127373..14133633)
Genome browser
AA seq
1226 aa
AA seq
DB search
MEEEEERILLKSLGVTSANPEDIERDVIAAAVENDAGNSNEAEQRNEEEPCVKLENIDPY
STGQEKLYDKLRAVEFEINAVAYTVDHLRREKDEEDQATNVDVGKGKLDIEDDKSVVQAS
SDGLSLQHALATDRLESLKETKAQLEKELSIYQFEKTSKDIKHDKLIQDLVKEEFRPKKK
AKETQKPGKKQSKRLKTVSFDDDADFDSVLDAASSGFVETKRDELVRKGILTPFHKLKGF
ERRLQQPGPSNWHNVTLEEEGKSSDLFSASVDRAVRSMSEAAQIRPTTKLLDPEEIPKLD
GPTHPFQRLKTPLKIPVFPESEVEKKEGTKKKKKRPLPNKKWRNRISLEETGVEANDGRN
NLVTSSYEVEKQEDVEDTDDSEPAFVTLEGGLKIPEYIFSNLFDYQKVGVQWLWELHCQR
AGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIVVCPVTLLQQWKREAQKWYPSFRVEI
LHDSAQDPGNRSKSSDSDYDSEGSLDGDYEEKWSSKNTKKWDFLINRVLRSESGLLITTY
EQLRLLGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRVIVTGAPIQNKLSEL
WSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVILRDLIMPYLLRR
MKADVNAQLPKKTEHVLFCSLTAEQQSVYRAFLASSEVEQILGGRKNSLYGIDVMRKICN
HSDLLEREHSCQNPDYGNPERSGKMKVVAQVLKVWKEQGHRVLLFCQTQQMLDILENFLI
SNGYDYRRMDGVTPVKQRMALIDEFNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW
NPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILRNPQQRRFF
KARDMKDLFTFNDDGDSGSTETSNIFSQLSEDVNLVVGAQKEKKLKRKKAATNADDDAGN
KENNLEVESFRRKGKEKADNNDGEVDEETNILKSLFDAQGIHSAVNHDIIMNAHDEEKMR
LQEQASQVAQRAAEALRQSRMLRSCDNISVPTWTGKSGIAGAPSSVRQKFGSTVNRQLIK
PSDDSSSSKTSKLGGFAAGASAGKALSSSELLSKIQGNQEKTAAAGLGHKVNSSSATGSR
STDVGTSRSSHNVSSVQPEVLIRQICTFIQQEGGSTDSASIVQHFRDRIPPQDLPLFKNL
LKEMAILKKDPNGSCWVLKPEFQQPE
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaggagaggattttgctgaaaagtttgggtgtgacatctgcaaatcct
gaggacatcgaacgtgatgtaattgctgccgcggtggaaaatgatgctggaaacagcaat
gaagccgaacagagaaatgaggaggagccttgtgttaaattggaaaatattgatccgtac
tccactggtcaagagaaactttacgataaattaagggctgtagaatttgaaataaatgct
gttgcttacactgttgatcatctgagaagggaaaaagatgaagaagatcaagctactaat
gttgacgttggcaagggaaagttggatattgaggatgataaaagtgttgttcaggcatct
tccgatggtttgtctcttcagcatgccctagctactgatagactggaaagcctcaaagaa
actaaggctcagcttgagaaggaactttcaatttatcaatttgagaagacttccaaggat
attaagcatgataaacttattcaagatctggtaaaggaagaattcagacccaagaaaaag
gcaaaagaaactcagaaaccaggcaaaaaacagtcaaaaaggctgaaaacagtttcattt
gatgatgatgctgattttgattctgtattggatgcagcatcttcaggatttgttgaaaca
aaaagggatgaattggttcgcaaaggaattttaactccttttcacaagcttaagggcttt
gaacgtcgtcttcaacaaccaggaccatctaattggcacaatgtaaccttagaagaagaa
ggcaaaagtagtgatcttttctcagctagtgttgacagagctgttcggtcaatgtcagaa
gctgcacaaattcgtccaacgaccaagcttcttgatccagaagaaattccgaagcttgat
ggaccaacacatcctttccagaggctaaaaacacctttgaaaattcctgtgtttcccgaa
agtgaggttgaaaagaaagaaggtaccaaaaagaaaaagaaacggcctttgcctaacaag
aagtggaggaatcgcatttctcttgaagaaacgggtgtggaagctaatgatggaagaaat
aacttggttacttccagttatgaggtagaaaagcaagaagatgtggaagatacagatgat
agtgagcctgcttttgtaacacttgaaggtgggctcaaaattccagaatacatttttagt
aatctttttgattatcaaaaggtaggagtgcagtggctatgggaattgcattgccagaga
gcaggtggaattattggagatgaaatgggtcttggcaagactgttcaagtgttatccttt
cttggggcattgcatttcagtggtatgtacaaaccaagcattgttgtctgcccagttaca
ctgttgcaacagtggaaaagggaagcacaaaagtggtatcctagcttccgtgtggagata
ttgcatgattctgctcaggatcctggtaatagaagcaaatcttctgatagtgactatgat
agtgaaggttcattggacggtgattatgaggaaaaatggtcctctaaaaacaccaaaaaa
tgggatttcttgataaatcgagttttaagatcagaatctgggctgcttattaccacttat
gagcaactacgcttgttaggggaaaagttgcttgatattgaatggggttatgctgttctg
gatgaaggacatagaattcggaatcctaatgctgaaattactctagtttgcaaacaacta
cagacagttcaccgggtaatagtgactggggcaccaattcaaaataagctttcagaattg
tggtccttgtttgattttgttttccctggaaagttgggggttttgcctgtttttgaggca
gaatttgctgttccaatagctgtgggtggttatgccaatgcttctcctttacaagtatcg
acagcctacagatgtgctgtgatcctacgagacttgatcatgccttatcttcttcggcgt
atgaaagctgacgtgaatgctcagcttcccaaaaaaactgagcatgttctcttctgcagc
ctcactgctgagcaacagtctgtatatcgagcatttcttgctagctctgaggtggaacag
atactgggtgggagaaaaaactctttatatggaatcgatgtgatgcgcaagatatgcaac
cactctgatctgcttgagagagagcattcctgccagaacccagattacgggaatcctgag
cgcagtgggaaaatgaaggttgttgcccaagttctgaaggtttggaaggagcagggtcat
cgtgttcttcttttttgtcaaactcaacagatgcttgatattctagagaatttcttgatt
tctaatggttatgactataggagaatggatggtgttactcctgtcaagcagagaatggcc
ttaatagatgagttcaataactccagcgatgtgtttatattcattctaactacaaaagtt
ggcggtttgggaacaaatttgactggtgcaaacagggtgatcatctttgaccctgattgg
aacccttcaactgacatgcaggccagggagcgtgcttggcgaattggtcagaaacgggat
gtaactgtttatagattgattacacgtggaactattgaggagaaggtgtatcaccgccag
atatacaagcattttcttactaataagatattgaggaacccacagcagagaaggtttttt
aaggctcgagatatgaaggatcttttcacttttaatgatgacggggatagtggatcaact
gaaacttctaatattttcagtcagttgtctgaagatgtgaatcttgttgttggggctcag
aaagaaaagaagctgaaacgaaaaaaagctgcaacaaatgctgatgatgatgcaggcaat
aaagaaaacaacttagaggttgaatctttcagaagaaaagggaaagaaaaagctgataat
aatgatggtgaagtggatgaagaaacaaatatcttaaagagtctttttgatgcacaaggc
atacatagtgctgtgaaccatgacataatcatgaatgcccatgatgaagagaagatgagg
ctgcaggagcaagcttctcaagttgcacaaagagcagcagaagctttgcgccagtccaga
atgcttcgaagttgtgacaacatatctgtcccgacatggacggggaaatctggaattgct
ggtgcaccatcatctgttcgccagaaatttggttcaactgttaaccgtcagttgattaag
ccctcagatgactcatctagcagcaaaacaagcaagttgggcggctttgcagcaggggca
tctgcaggaaaggcattatcttcatctgaattactatctaaaatacaaggaaatcaagaa
aagacagctgctgctggacttggacataaggtgaactcaagttctgctaccggatcaaga
tctacagatgttgggacctcacggtcatctcacaatgtttctagtgtgcagcctgaagta
ttgattcgtcaaatatgtacttttatccaacaagagggtggaagcactgattcagccagc
atagtccagcattttagggataggatacccccacaggatcttcctttatttaaaaatctt
ttgaaggaaatggctatccttaaaaaggacccaaatggatcatgttgggtgctgaagcct
gagtttcaacaaccggaatga
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