Mangifera indica (mango): 123217225
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Entry
123217225 CDS
T07684
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123217225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123217225
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
123217225
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
DUF4200
Motif
Other DBs
NCBI-GeneID:
123217225
NCBI-ProteinID:
XP_044494004
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Position
5:complement(9942216..9946556)
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AA seq
485 aa
AA seq
DB search
MATLADSFLADLDELSDNEADIIEEDEGDATNMEEDIDGDMEDIEALNYDDLDNVSKLQK
TQRYTDIMQKVEEALQKGSATSDHGIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRD
KYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKP
LPEEVLQKTIGACDRALTLDSAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGL
SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQTTPPSLRMRACRLLAAK
STLAARVDSTRGDPSGAAGRAFREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSLGQSKLAA
KVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSETGTFS
KIKRT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttgctgattctttcctagctgacctggacgagttatctgacaatgaagct
gatattattgaggaagatgaaggtgatgccacaaacatggaagaggacatcgatggggac
atggaagatatagaagctcttaactatgatgacctggacaatgtttcaaaattgcaaaaa
actcaaagatatactgatataatgcagaaagttgaagaagcacttcagaagggttctgct
acttcagatcatggaatagtattagaagatgatccagaataccagctaattgtggattgt
aatgctctgtctgtcgatattgagaacgaaattgttattatccacaatttcattcgtgac
aagtatcgcttgaaatttccggagcttgaatcacttgtgcatcaccccattgattatgct
cgtgttgtgaaaaagattggcaatgagatggatcttacccttgttgatctggaggggctt
ttaccctcagctattattatggtggtttcagttacagcgtcaaccacaagtggtaagcca
ctcccagaagaggtcctccaaaagacaattggcgcatgtgatcgagctcttactcttgat
tcagcaaagaagaaggtccttgattttgtggaaagcagaatgggatatattgcaccaaat
ttatctgcgattgttggaagtgctgtcgcagccaaacttatgggaactgcaggggggctc
tcagcattagctaagatgcctgcttgtaatgttcagcttctaggtgccaagaaaaagaat
cttgcagggttttctactgcaacatcacaattccgtgttggttatcttgagcagacagag
attttccaaaccacccccccttctttgaggatgcgagcctgtcggctcttagctgctaaa
tcaacccttgcagcacgtgtggattctaccagaggagatccatcaggagctgctggaaga
gcatttagggaagagattcgcaagaagattgaaaaatggcaagagcctcctcctgcaaag
caacctaaaccacttccagttcctgattcagaaccgaaaaagaagagaggtggccgtcgg
ttaaggaagatgaaggaaagatatgcagtaacagatatgaggaagctggctaacaggatg
ttatttggtgtacctgaagagagttccttaggtgatggactgggggagggttatggaatg
cttggtcaggctgggagtggcaaactccgtgtctcacttggccagagcaaacttgctgca
aaagttgctaagaagttcaaggaaaaaaattatggaagcagcggtgctacttctgggctg
acgtcaagtctggcatttactcctgtgcaggggattgagctcacaaatccgcaggctcat
gcacaccaactcggcagtggaactcaaagtacctacttctcagagactggtacattttca
aaaatcaagcggacctaa
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