Mangifera indica (mango): 123218016
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Entry
123218016 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC123218016
KO
K13217
pre-mRNA-processing factor 39
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123218016
Spliceosome [BR:
minc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
123218016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
123218016
NCBI-ProteinID:
XP_044495104
LinkDB
All DBs
Position
6:1598819..1605650
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AA seq
1126 aa
AA seq
DB search
MASQISNSELESRPTEPNSPVGFDERRLEQVITEGSLDFDEWTILLTEIENTFRDDIEKI
CLVYDAFLVEFPLCYGYWMKYANHKARLCTVDKVVEVFERAVQAATYSVDVWLHYCCFGI
TAFEDPHAVRRLFKRALSFVGKDYSCHTLWDKYLEYEFSQQQWSSLAHIYIQTLRFPSKR
LHNYYDSFKKLAAAWKKKFDCQNSATELQSDLVLETGVPKYFKDDEISAVIKELLEPSVG
LARSKAVQKYVLIGEHIYEESCQLDQKIHCFETRIRRPYFHVKPLDVSQLENWHDYLNFA
EKQGDFDWVVKLYERCLIPCANYPEFWMRYVDFMESKGGRELANFALARATQIFLKRMPM
VHLFSAHYKEQIGDVCAARAAFLGYDTEADSTFIENVTIKANMEKRLGNFSAACHVFKEA
LETAAEKKKFHILPILYVRFSRLKYMTTDSADAARDILIDGIKHMPHSKLLLEELIKFVM
MHGGSRHLNVVDSVIANALYSGPDLLDAFSQEDVEDVSSLYLQFVDLCGTVHDVRKAWNR
HIKLFPHSLRSAYEHPTAGKNHXSIMEGKLKNIFALPPRLSGSGYSIQSPSQDKKVSPPQ
NYDSQSDHETTTLLLEQKSPLLENHDIQSDAGARIDHLQSGEADNSIQDKMQQVSPEVRE
QRGEDICEPIMAPLDLVHQVAAETEAKASLEFSKDNDVQDGPDHESKEDTKLLSLEGLSL
DPQENQSPSSVCTTSHKCEVPQETSFSHESNLKSEALQENSLSQESNLKSEVPQENIISN
GDTMLGDQNTNGSHLLSSSMSTQVSDSSQIQIETASPSSVVYHQNFVKEEPLQSQKPMNS
GRNWHQRHNNDRIHRDSRYGFRGHSHKRQYQQQQVSSQQYPHGELHGQMPVNQGYPSQPL
PSQNPQFEQGRQAQNDYPASANLTAPQAWPMQNMQQQNFASASQVPPQADAYAEAQMSQF
PMQSHVQQGHLQGNQAYNQMWQYYYYQQQQQQQFLLQQQHLQQLHQQQPHQQQQYQAQQY
FQQQQHLQIQQPHFLPQQPYQQPQPQHLLYLHPQQQMQYQQVQQQQQQQPPHHEQQEQEQ
TQPEHQDSVLQIDSRSQSSSEQGIGVAPPYSTGAPGTVTSVASPNP
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacaaatttcgaactccgaactagaatctcggcccacggagccgaactctcca
gtcggttttgatgagcgcagacttgagcaagttataactgaaggctctctagactttgat
gaatggactatactcctaacagagattgagaatacatttcgtgatgacatagagaaaata
tgtttggtgtatgacgccttcttggtggagtttcctttgtgctatggttactggatgaag
tatgctaatcacaaggcacgcttgtgcactgttgacaaggttgttgaagtctttgaacgt
gctgttcaagcagctacctattctgttgatgtgtggcttcactattgttgctttggcatt
acagcatttgaagatcctcacgctgttcgtagattattcaaaagagccttgtcatttgtt
ggaaaagattactcatgtcataccttgtgggataaataccttgaatatgaattctctcag
cagcagtggagttctctagctcacatatacatccaaactttgagatttccgagcaaaagg
ttacataattattatgatagcttcaaaaagttggctgctgcttggaaaaagaagtttgat
tgtcagaattctgccactgaattacagtcagaccttgtacttgaaactggtgtaccaaaa
tattttaaagatgatgagatctctgctgtcatcaaagaactactagagccatcagttgga
ttagctagatctaaagcagtacagaaatatgtacttattggggaacatatctatgaggaa
tcatgccagttggaccaaaaaatacattgttttgagactcgcattagaaggccctatttc
catgtgaagccacttgatgtgagtcaattagaaaattggcatgactatctgaactttgct
gagaagcaaggcgattttgactgggtggtcaaactctatgagaggtgcttaattccttgt
gccaattaccctgagttctggatgcgttatgtggatttcatggaaagtaaagggggaaga
gagttagcaaactttgcattggcacgagcaacacaaatttttctgaagagaatgccaatg
gtccatctttttagtgcccattacaaggagcaaataggagatgtatgtgctgcccgtgct
gcctttctgggatacgatactgaagcagattcaacttttattgaaaatgtcacaattaaa
gctaacatggaaaagcgtctgggaaatttttcggcagcttgccatgtattcaaagaagca
ttagaaactgctgctgagaagaaaaagtttcatattcttcctatactgtatgttcgtttt
tcacggcttaagtacatgactaccgatagtgcagatgcagcaagagacattttaattgac
ggaatcaagcacatgcctcactccaaattacttctggaggaactgataaagtttgtaatg
atgcatggagggtcaagacacctgaatgttgtagactctgttatagctaatgcattatat
tcaggtccagatttacttgatgcttttagtcaggaggatgtggaggatgtatcaagctta
tatttacagttcgtcgacctgtgtggtactgtccatgatgtaaggaaggcatggaatcgg
cacatcaaattatttccacactctctgaggagtgcttatgagcatcctactgcaggtaaa
aaccattgatcaatcatggaaggaaagctaaaaaatatttttgctttacctccaaggctg
tctggatctggctactcaatccagtcgccttctcaagacaaaaaagtttctcctccacaa
aactatgatagtcagtctgaccatgagacaactacattgttattagaacaaaaatcacca
ttgctggaaaatcatgatattcaatccgatgctggtgctagaattgaccatcttcagtct
ggagaagctgacaacagcatacaggataaaatgcaacaggtatctcctgaagtcagggag
cagcgtggagaagatatttgtgaaccaattatggcacctcttgatttagtacatcaagtt
gctgctgaaactgaagctaaagcttctctagaattctctaaagacaatgatgttcaagat
gggcctgaccatgaatccaaagaggatacaaagctactttctttggagggactttcctta
gatccacaagaaaatcaatctccaagctcagtgtgtaccacatctcacaagtgtgaagtt
cctcaagaaaccagtttttctcatgaaagcaatttgaagagtgaagctctacaagaaaac
agtttgtctcaggaaagcaatttaaagagtgaagttccacaagaaaacattatttcaaat
ggagatacgatgctgggtgatcagaataccaatggaagtcaccttttatccagctcaatg
agcacacaagtgtctgattcttcccaaattcaaattgaaactgctagtccatcttctgtg
gtgtaccatcaaaattttgttaaagaggaacctttacagtcacaaaaacctatgaatagt
gggcgaaactggcatcagaggcataataatgacagaattcacagagattctagatacggt
tttcgaggacattcacataaaaggcagtatcaacagcaacaagtttcttcacaacagtac
ccacatggtgaacttcatggtcaaatgcctgtgaatcaaggttacccctctcaacctttg
ccttcacaaaacccacaatttgagcaagggcgccaagcacaaaatgactacccagcgtct
gctaatcttacagcacctcaagcctggccgatgcaaaacatgcagcagcagaattttgct
tctgcttctcaagtacctcctcaagctgatgcttatgctgaagcacaaatgtctcagttt
cccatgcaaagtcatgtgcagcaagggcatctacagggtaaccaagcatataatcaaatg
tggcaatattattattatcaacagcaacagcaacagcagtttcttctgcaacagcaacat
ttgcaacaactgcaccaacagcagccccatcagcaacaacagtatcaagcacagcaatat
tttcagcaacaacagcaccttcagattcagcaaccacattttctacctcaacagccctat
cagcagccacagccacagcatctactttacctgcatccacaacagcagatgcaatatcag
caggttcagcagcagcaacaacaacaaccaccacatcatgagcagcaagaacaagaacaa
acacaacctgagcatcaagacagtgtattgcaaatcgactctaggagtcagagcagctct
gaacagggcataggagttgcaccgccatatagtacaggtgcgcccgggactgtcacatct
gttgcatctccaaatccttag
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integrated database retrieval system
