Mangifera indica (mango): 123218113
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Entry
123218113 CDS
T07684
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123218113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123218113
03009 Ribosome biogenesis [BR:
minc03009
]
123218113
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123218113
Spliceosome [BR:
minc03041
]
Complex A
U1 snRNP components
U1 related factors
123218113
Complex B
123218113
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
Pre-60S particles
Helicases
123218113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123218113
NCBI-ProteinID:
XP_044495275
LinkDB
All DBs
Position
6:8125528..8130632
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AA seq
504 aa
AA seq
DB search
MSRYDSRSSDPSSYRDRRSDSGFGGSSGYGSSVRSSSSRSEHNSAEPPRKLDLDGLTPFE
KNFFVESSSVAAMSQSEVEEYRQQREITVEGRDVPKPVKSFRDMGFPDYVMQEITKAGFV
EPTAIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP
TRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
NTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSQDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILQEAGQKVSPELAAMGRG
PPPLSGHGGYRDRGRGYSGGRSWN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgctcgtcggaccccagctcatatcgtgaccgtcgaagtgat
tcagggtttggtggctcttcgggctatggcagctcagtgcggtcctcttcaagcaggagc
gagcataatagtgctgagccaccaaggaagttagatttggatggattgactccttttgag
aagaacttctttgtcgagtcatcatcagtggctgcaatgtcacagagtgaggtggaggag
tatcgacaacagagggaaattacagttgaaggccgtgatgtgccaaagcctgtcaagagt
ttccgtgacatggggtttccagattatgttatgcaagaaattactaaagctggctttgtt
gagccaacagccatacaatctcaaggatggcctatggctttgaagggtcgtgatcttatt
ggaattgctgaaacaggctctggaaagacgcttgcctatcttttacccgcaattgttcat
gttaatgcccagccatttttagctccaggagatggccctattgtgctagttttagctcca
actcgtgaacttgctgttcagattcaacaagaagctactaaatttggtgcatcatcacgg
attaaaagtacatgcatctacggaggggttcctaagggacctcaagtgcgtgatctccag
aaaggtgttgaaattgtcattgctactcctgggaggttgattgatatgttggagtcacac
aatacaaatttgcgaagagtaacttaccttgtcttggatgaggctgatcggatgctggac
atggggtttgagcctcaaatacggaagattgtttctcagatccgccctgatcgtcaaaca
ttatattggagtgccacttggcctaaggaggttgagcaacttgctaggcagttcctttac
aacccatacaaagtgattattggttcacaggatttaaaagctaaccatgcaattcgccag
catgttgatattgtttctgagagccagaaatataacaaattggtaaagctgctggaggac
atcatggatggtagccgaatactgattttcatggatactaagaaaggttgtgaccaaatt
acccggcagcttcgcatggatggatggcctgctctctcaattcatggagataaaagtcaa
gcagaaagggattgggtcctctcagagtttaaagctgggaagagtccaataatgactgca
acagatgttgcagctcgtggtttagatgtcaaggatgtaaaatatgtgataaattatgac
tttccgggatctcttgaggattatgttcatcgcattggtcgaactggaagagctggggca
aaggggacagcatacactttcttcacagcagcaaatgctagatttgctaaggaactgatt
accatactccaagaggctggacagaaggtcagtcctgaattggcagctatgggtcgtggc
ccacctcctctgtcagggcatgggggttaccgagaccgtgggagaggttacagtggtggt
cgctcatggaactaa
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