Mangifera indica (mango): 123218673
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Entry
123218673 CDS
T07684
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03020
RNA polymerase
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123218673
09124 Replication and repair
03420 Nucleotide excision repair
123218673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123218673
03400 DNA repair and recombination proteins [BR:
minc03400
]
123218673
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123218673
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123218673
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123218673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
123218673
NCBI-ProteinID:
XP_044496140
LinkDB
All DBs
Position
6:2988831..2996524
Genome browser
AA seq
1196 aa
AA seq
DB search
MDGEEEFDHDHCHDPQEENDDDDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ
EIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR
LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD
LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN
RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGYVADKDILEHICYD
FEDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHV
GTGDYCETKKAYYFGYIINRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL
TRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR
LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI
TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRR
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIHALQQRESPEDGG
WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYSDTYTHCEIHPSLILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH
FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKED
FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQASRYTRR
DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT
QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI
SKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT
RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLK
KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEPKTSKDLKKKGA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgaagaagagtttgaccacgaccactgccacgacccgcaggaggagaatgat
gacgacgacgatatcacgcaggaggatgcgtgggctgttatttcagcttatttcgaagag
aagggtttggttcgccaacaactcgattctttcgatgaatttatccagaacactatgcaa
gaaattgttgacgagtccgcggacatcgagattcgccctgaatcacaacataaccctggc
caccagtctgattttgcggagaccatctataagatcagctttggtcagatatatttgagt
aagcctatgatgactgaatccgatggagaaactgctactttgtttcccaaagctgcgaga
ctgaggaatctgacgtactctgccccgttgtatgtggatgtcactaagagagttataaag
aaagggcatgatggtgaagaagtcactgaaactcaagattttaccaaagttttcattggg
aaggttcctataatgcttcggtcaagttattgcacactatatcaaaactcagagaaggat
ttgacagagcttggggagtgtccttatgatcaaggtggatattttattatcaacggtagt
gaaaaggttctaattgcgcaagagaagatgagcactaatcatgtgtatgtgttcaaaaag
aggcagcctaacaaatatgcctatgtggctgaagttcggtctatggcagagtcacaaaat
agaccacccagcaccatgtttgtgcggatgctttctaggacaagtgccaaagggggctct
tctgggcagtatattcgggctacacttccatacattcgaactgaaattcctattattatt
gtattccgggctttggggtatgttgctgacaaagatatcttagagcacatatgctatgac
ttcgaggatactcaaatgatggagttgctccggccttccctagaggaagcatttgtcatt
caaaaccaacaggttgcgctagactacataggaaaaagaggagcgactgtcggtgtaact
agggaaaagaggattaagtatgccaaagagatccttcaaaaagaaatgcttcctcatgtt
ggtacaggagattattgtgaaacaaagaaagcttattattttggatatattattaatcgg
cttctactttgtgcacttggccggagggctgaagacgatagggatcattatggcaacaaa
aggctggaccttgctggtcctttacttggaggccttttcagaatgctgttcagaaagtta
accagagatgtcagaggctatgtccagaagtgtgttgataatggaaaggatgttaacctg
caatttgctatcaaagcaaaaaccattaccagtggtctgaaatactcgcttgcgactggc
aactggggtcaagcaaatgcagccggtacgagggctggagtgtcacaggtgttaaatcgt
ctaacatatgcatctacattgtcacatttgcgaagattaaattctccaatagggcgtgaa
ggaaaattggccaaacccaggcagttgcacaattcacagtggggaatgatgtgtcctgct
gaaacacctgaaggacaagcttgtggactggttaagaatcttgcgttaatggtttacata
actgttggatcagctgcatatcctattttggaatttttagaagaatggggaactgaaaat
ttcgaggaaatttctccagcggtaattcctcaagctacaaaaatcttcgtaaatggttgt
tgggttggtatccaccgtgatccagatatgttagtgaaaacattgagaagattaaggaga
cgggttgatgtcaatactgaagttggggttgttagagatattcgtttgaaagagttgcgt
atatatactgactatggacgttgcagtcgtccactattcattgtggaaaaacaaaggctt
ctcataaagaagagagacattcatgcactacagcagagggaatccccagaagatggtggt
tggcatgatcttgtagcaaagggattcatagaatatattgacacagaagaagaagaaaca
accatgatttctatgactattaatgatcttgtacaagcaagacttcatcctgaagaggcc
tattctgatacgtacacacattgcgagatccatccatccttgattttgggtgtttgtgct
tcaattataccatttcctgatcataatcagtccccccgtaatacatatcagtctgccatg
ggtaagcaggccatgggaatctatgtcacaaactaccaatttcgtatggatactttggcc
tatgttctctattatcctcaaaaaccactcgttactacacgagctatggaacacctccac
tttaggcagcttcctgcaggcattaatgctattgttgcaatcgcttgttattctgggtac
aaccaagaagattctgttattatgaatcaatcatcagttgatcgtgggttctttcgatca
cttttcttccgttcatatagagatgaggagaaaaagatgggtactcttgtaaaagaagat
tttggccgcccagatagatctaataccatgggtatgcgacatggttcttatgataaattg
gatgatgatggtcttgcacctcctggaacaagagtctctggtgaggatgtgatcattgga
aaaactacacctattgctcaggatgaagctcagggtcaggcgtcacgttatacaagacgt
gatcatagcataagcttacgtcacagtgaaacagggatagtggatcaagttttattgaca
acaaatgcagatgggttgaggtttgtgaaagtaagggttagatctgttcgaataccccag
attggagataaatttagcagtcggcatggtcagaagggaacagtgggcatgacttataca
caggaagacatgccgtggacagtggaaggcatcacccctgatatcattgtgaatccgcat
gctattccttctcgaatgactattggtcagcttattgagtgtatcatggggaaggttgcg
gctcacatgggaaaggaaggtgatgccacaccttttacagatgtcaccgtggacaatatc
agtaaagctcttcacaaatgtgggtatcaaatgcgtgggtttgagacaatgtacaacggt
cacacaggcaggcgactcagtgctatgatattcctggggccaacttattaccaaagattg
aagcacatggttgacgataagatacattctcgtgggcggggacccgtacagattctcaca
aggcagcctgctgagggacggtctcgtgatggtggccttaggtttggtgaaatggaacga
gattgtatgattgctcatggtgctgctcactttctcaaggagaggttgtttgaccaaagc
gatgcatatagggttcatgtgtgtgagagatgtgggttaatagcaatcgcgaatctgaag
aagaattcttttgagtgcagaggttgcaagaacaaaactgacattgttcaggttcacatt
ccttacgcatgtaagttgctcttccaagagcttatggccatggccattgcaccaagaatg
ctgacgaaggagccaaagacttccaaagacctgaagaagaaaggtgcttga
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integrated database retrieval system
