Mangifera indica (mango): 123218974
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Entry
123218974 CDS
T07684
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123218974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123218974
03019 Messenger RNA biogenesis [BR:
minc03019
]
123218974
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123218974
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123218974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-GeneID:
123218974
NCBI-ProteinID:
XP_044496564
LinkDB
All DBs
Position
6:complement(12290266..12312435)
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AA seq
698 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDAGPAVPTASNPVIQADSSLIANPNSAAPSAGGAATADPGAAGG
NHAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRMFGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHVKLPGPPPSVEEVLQKIQQISSYIHGNSNKFFQHR
NSLPQQTEKSQFPQGTNSVNQGAAGKPSAVDSANVQQQQQQQQVQQPQQQGMQTLMQNLP
NGIPNQANRATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENV
ILIFSVNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTR
HLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAEAKREEEKAKGV
NPENAGDNPDIVPFEDNEEEEEEESEEEDESIGSASQGRGRGRGMMWPPHMPLARGARPI
PGMRGFPPVMIGADGFSYGPVAPEGFPMPDMFGVAPRAFPPYGPRFSGDFTGPSGMMFPG
RPPQPGAVFPANGFGMMMGPGRAPFMGGMGPNATNPRAGRPVGVPTMFPPAPSSSQNTGR
SSKRDQRVPNNDRIDRYSAGSDQGRGQEMAGPGGGLEDDTRYQQEGLKGHHEDQFGSGNF
RNDESESEDEAPRRSRHGEGKKKRRGSEGEVGNGSDHL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcagaagggggtctcagcttcgacttcgagggcggtctcgacgcgggtccc
gccgtccctaccgcttccaatcccgttatacaagccgattcctcgctcatagcaaacccc
aattcagccgctccttctgctggtggagctgccacagctgaccctggtgcggcgggagga
aatcatgccggacggaggagtttccggcagacagtgtgccggcattggctacgtagcctt
tgtatgaagggtgacgcctgtgggttccttcaccagtatgacaagtctagaatgccggtt
tgtcggttctttaggatgtttggagagtgccgtgaacaagattgtgtgtataaacacact
aatgaagatatcaaagagtgtaacatgtacaagctggggttttgtccaaatggtcctgat
tgtcgctataggcatgtgaagttgcctggaccccctccttctgtggaagaagtccttcag
aagattcagcaaataagttcatacattcatggcaactcaaacaaatttttccaacatcgg
aattctctgcctcaacaaacagaaaaatcacagtttccacagggtaccaattctgtcaat
caaggtgctgcagggaaaccttcagcggtggattcagctaacgttcagcagcagcagcag
cagcagcaagttcaacagccccaacaacagggtatgcagaccctgatgcaaaaccttccc
aatggcatacctaatcaggcaaacagggctacacccttgccccaaggaatatctaggtac
tttattgttaaaagctgcaaccgtgaaaatctggaattatctgtacaacaaggggtttgg
gcaactcaaaggagcaatgaagctaaattaaatgaagcctttgactctgccgaaaatgtg
attctaatcttctccgtcaatcgaactcgacacttccagggttgtgccaagatgacatcg
aaaattggcgggtctgtgggaggagggaattggaaatatgcacatggaactgcacattac
gggcggaatttctctgttaaatggttaaagttatgtgaactgtcatttcacaagacccgc
catttgaggaatccatacaatgaaaacttgccagtgaagattagcagagattgtcaggag
ttagagccctctattggtgagcaattggcttccctgctttatctcgaaccagatagtgaa
cttatggctatatcagttgcagcagaagcaaaacgagaggaggaaaaggcaaagggagtc
aatccagagaatgctggggataacccagacattgtcccatttgaggacaatgaagaagag
gaagaggaagaaagtgaagaggaggatgagagcatcggatctgcaagccagggcagaggg
aggggcagagggatgatgtggcctcctcacatgccactagcacgtggggctagaccaata
cctgggatgcgaggttttccccctgttatgataggtgctgatggattttcgtatggacct
gttgcacctgagggttttccaatgccagatatgtttggtgtggctccccgtgcttttcca
ccatatggccctaggttttctggtgattttacaggcccatctggcatgatgtttcctggg
cgacctcctcaaccaggggctgtgtttccagctaatggctttgggatgatgatgggtcca
ggtcgagccccttttatgggagggatggggcccaatgctacaaatcctcgagctggtcgg
ccagttggtgtgcccaccatgtttccacccgcaccatcatcctctcaaaacactggtcgt
tcttctaaaagagatcagagggtgccaaacaatgatcgcattgacagatatagtgcagga
tccgaccagggcaggggtcaagaaatggctggtccaggtgggggactggaggatgataca
cgatatcaacaagaaggattaaaaggacaccatgaagatcaatttggttctggaaacttt
agaaatgacgagagtgagagtgaggatgaagcaccaaggcggtctagacatggtgaggga
aagaagaagcggcgaggctcagaaggagaggtgggcaacggttcagatcacttgtag
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