Mangifera indica (mango): 123219092
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Entry
123219092 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123219092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123219092
03041 Spliceosome [BR:
minc03041
]
123219092
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123219092
Spliceosome [BR:
minc03041
]
Complex B
Other components
Prp19-related factors
123219092
Complex C
123219092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
NRDE-2
UTP6_C
Motif
Other DBs
NCBI-GeneID:
123219092
NCBI-ProteinID:
XP_044496762
LinkDB
All DBs
Position
6:complement(3483108..3490014)
Genome browser
AA seq
920 aa
AA seq
DB search
MTISKDLYPSQDDLLFEEELLRNPFSLKLWWRYLIARLESPFKKRFVIYERALKALPGSY
KLWHAYLRERLNIVHNLPITHPQYETLNNTFERALVTLHKMPRIWIMYLETLTRQKLITK
TRRTFDRALCALPVTQHDRIWEIYLRFVEQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQESAERLASVLNDXKFFSIKGKTKHRLWLELCHLLTGHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMSTVVTVRDFSVIFDAYSQFEESMV
AHKMETMQSSDEEGGDGGEEDGFEEDEDVRLDVNLSIAKLEKKILHGFWLHDDKDVDLRL
ARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPIKAV
GKPHTLWVAFAKLYESHKDVANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFRG
ALDRMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYE
RILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GKTKLERARELFDNAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYHQATKAVPNHEK
LGMYEIYIARAAEIFGVPKTREIYEQAIESDLPDKDVKTMCLKYAELEKSLGEIDRARAI
YVFASQFADPRSDSDFWNRWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ
KDQRLTIDDAKDKLKQAGVPEDEMAALERQLAPVTNNTTAKDSGRKVGFVSAGVESQPDG
GIKASANHEDIELPDESDSEDEEKVEIAQKNVPSAVFGSLGRKREESKKGEDGGDGVAAK
DMDGENRLGALERIKRQKKV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgacgatctcgaaggatttatacccttcacaagatgatctcttgttcgaagaagagctc
ttgcgaaatccctttagtcttaagctctggtggcgctatttgattgcgagacttgagtct
cctttcaagaagcgtttcgttatttacgaacgagctctaaaagcgttgcctggaagctac
aagctttggcatgcctatttacgtgagcgcctcaacattgtgcataacttacccataact
cacccacagtatgaaacccttaataatacatttgagagagcccttgtcaccttgcataaa
atgcccagaatttggattatgtatctggagactctgaccaggcagaagttgattactaaa
actcgtagaacgtttgatagggcactgtgtgcattgcctgtgacgcagcatgataggatt
tgggagatatacttgcggtttgtggagcagagaggtattccgatagaaacctctcttagg
gtttacaggaggtacttgaagtatgatccatcccacattgaggactttattgagtttttg
gtgaattcgagtctttggcaggagtctgctgagagattagcatcagtgttaaatgatnng
aaatttttttcaataaaggggaaaacgaaacataggttatggttagaattgtgtcatttg
ttaaccgggcatgcaactgaggtttcaggccttaatgtggatgctataattaggggtggg
attaggaagttcacagatgaggttgggaggttgtggacttcattggccgattattatatt
cggagaaatttatttgagaaggcaagagatatctttgaggaagggatgtcaacggttgtt
actgtgcgggattttagtgtgatttttgatgcatactcgcagtttgaggagagtatggtt
gctcataagatggagactatgcagtcaagtgatgaagagggtggagatggtggcgaggag
gatggttttgaggaagatgaagatgttcggttggatgtgaatttatcaattgctaagctt
gagaaaaaaattcttcatggcttttggttgcatgatgacaaggatgtagatttaaggttg
gctcggttggagcatctgatgaacaggaggccagaattggctaatagtgttctcttaagg
caaaatccacataatgttgaacagtggcatagaagggtcaagatatttgagggtaatccc
accaagcagattttaacatacacagaggcagtgaggaccattgatcctataaaagctgtg
ggaaagcctcacactctttgggtcgcatttgctaagttatatgagagccacaaagatgtt
gccaatgcgagagtgatttttgataaagcagttcaagtgaactacaagactgtagaccac
ctggccagtgtttggtgtgagtgggcagaaatggagttgaggcataaaaatttcagagga
gcactggaccgtatgaggcgggctacagcagagccatcagttgaggttaaacgaagagtg
gctgctgatggaaatgaaccagttcagatgaagttgcataaatccttgagactttggact
ttttatgtggatttggaagagagcttgggtaccttggaatccactcgggctgtttatgag
cggatattggatttaagaattgccacgcctcagattatcataaattatgcactgcttctg
gaagagcataaatactttgaagatgcattcaaagtatatgaaagaggggtcaaaattttt
aaatatcctcatgtaaaagatatctgggtcacatacctttcaaagtttgtgaagagatat
gggaagacaaaacttgaaagggcaagagaattatttgacaatgctgttgaaacggcccct
gcagatgcagttaagccattatatcttcaatatgcaaaactggaggaggattatggtcta
gcgaaacgagctatgaaagtctatcatcaggctactaaggcagttccaaaccacgagaaa
ttgggcatgtatgaaatatatattgcacgggcagctgagatatttggtgtaccaaaaaca
agggaaatttatgagcaagctatagagtctgatcttccagacaaagacgtgaagaccatg
tgtttgaagtatgcagaactagaaaagagcttgggagaaattgatcgtgctcgtgctata
tatgtatttgcatctcagtttgctgatccacggtctgattctgacttctggaatagatgg
catgaatttgaggtgcaacatggaaatgaagacaccttccgagaaatgttacgcattaaa
cggagtgtttctgccagctacagccagacgcacttcattctcccagaatatctcatgcag
aaagatcagagactgacgatagatgatgcgaaggacaaactgaaacaggctggggtccct
gaagatgaaatggcggctttggaaaggcaattagcacccgtgacaaacaacactactgcc
aaagatagtggcagaaaagtggggttcgtcagtgctggagtggagtctcaacctgatgga
gggataaaagcctcagcaaatcatgaagacattgagctcccagatgaaagtgattcagaa
gatgaagaaaaagtggaaattgcacaaaagaatgttccatctgcagtttttggtagtcta
ggcagaaagagagaagagagcaaaaaaggcgaggacggaggtgatggagttgctgctaaa
gatatggacggtgagaaccgacttggcgccttggagagaataaagaggcagaagaaagtt
tga
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