Mangifera indica (mango): 123219243
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Entry
123219243 CDS
T07684
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123219243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123219243
03019 Messenger RNA biogenesis [BR:
minc03019
]
123219243
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123219243
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123219243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
123219243
NCBI-ProteinID:
XP_044497011
LinkDB
All DBs
Position
6:11004570..11011286
Genome browser
AA seq
1009 aa
AA seq
DB search
MPNELAQKPPLPPTIMDKFQALLKQREGEARVSLAVGDGDAVALGTDEIVELYEMMLAEL
TFNSKPIITDLTIIAGDQRAHGEGIAHAICDRIVEVPVEQKLPSLYLLDSIVKNIGKDYV
KYFSSRLPEIFCEAYRQLHPNLYPAMRHLFGTWSTVFPPSVLQKIETQLQFSRQVNKQST
GFNSLQPSDSSRPTHGIHVNPKYIRQLENSAPDNNVQHLRETSSSLKLYGQRSAIGYDEF
DADLAEVTSSHVAAQRLNSTGSVGCAASFALGANKPHPSTSRLARASSPSRMGSDRILSS
NGDEFTVENSPRRLQVASPSHPVFDYGLGRATGRDEELSEWWRKQYSDVTNKTFEISSSY
NLSNGLEHQGPRALINAYGSDKRISNNKPLHVERLYVKGMGKKAAPRSWQNTEEEEFDWE
DMSPTLADSGKKNNFLPSSVPPFKNFGTRPDLRKLGTGTLESDIMSNHSSQAQQPLINDS
SINVDEAVSLLGSGHGLTVKMSSFQPEPNQNLGPHYPHEPWNMPHHFSRSAHPLNSSSGR
GSDFRFPFSSGSVSSLGDDKMAPLVDKLSNVESQVIRPPAVASKIGSFALDSVSAEAWSA
SIPSSAGVWPPANVHKSHPPPVYPLQKQIRSQYDLKNSTSNVMNQCLNKLMYMPQQHFSS
EGKDLSLMKPPQLHDQHANLNQQNHAQPQSFPSQEAHNNSLPSVPASVQPHLLAAPVNHG
YNAVMSMAPANPVPAVQLPLSIKDFPNSSLHLLRGTLPPLPPGPHPSSQIIPMPQSTGLV
TPGQPQSTAFSGLINSLMVQGLISSTKQTPVQDSVGLEFNVDLLKMRHESAISALYGNLP
RQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWLVSASMWLSSAEALGTDAV
PGFVPSETVVEKKDDEEMAVPADEDQNVCALCGEKFDDFYSDETEEWMYKGAVYMNAPAG
SAAGMDRSQLGPIVHAKCRSESTVVLPERCTHDEGGNTEEGSQRKRMRS
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgccaaatgaactggcgcagaagccgccgctgccgccaaccataatggataagtttcaa
gctcttttgaagcaacgagagggggaagctagggtttctttggcggttggggatggtgac
gctgtggctctcgggacagacgagattgtggaactttacgagatgatgttagcggaactt
acttttaattcgaagcctatcattactgatctcacaataattgctggcgaccagagagcc
catggggaaggcattgctcatgcaatttgcgacaggattgtcgaggtcccagttgagcag
aaactgccatctttatatcttcttgatagtattgtgaagaacattggcaaagactatgtt
aagtatttctcttctcgtttacctgagatattttgtgaagcatacaggcaacttcatcct
aacctttatcctgccatgcgacacctgtttgggacttggtcaactgtgtttccaccttca
gtcctccagaagattgaaacacagctgcagttttctcggcaagttaacaaacaatcaacg
ggctttaactctttgcagccttctgattcatctcgaccaacacatggcatacatgttaat
cctaaatatatacgtcaattggagaattcagctccagataataatgttcaacatctgaga
gaaacttcttcgagtctgaaactttatggtcagaggtctgccattggatatgatgaattt
gatgctgatcttgcagaggttacatcatcgcatgttgcagcccaaagattgaattctact
ggcagtgttggttgtgctgcatcttttgcccttggagctaacaagccacatccttctact
tctagactggcaagagcctcatcgccttcaagaatgggatctgatagaattttatcatct
aacggtgatgaatttacagtagaaaattctcctagaaggcttcaggtggcctcaccatca
catcctgtgtttgattatggattagggagagcaaccggcagagatgaggagttaagtgaa
tggtggagaaagcaatattctgatgttactaacaaaacatttgaaatttcttcatcttat
aaccttagcaatggacttgagcaccaggggcctagagctttgataaacgcatatggaagt
gacaaaagaatttccaataataagcctctgcatgttgaacgcctatatgttaaaggaatg
ggcaagaaggcagcgccaaggtcatggcagaatactgaagaggaagagtttgattgggaa
gatatgagccctacgttagcagatagtggcaagaaaaataatttcttgccatcatctgtt
ccaccttttaaaaactttggtacaaggcctgacttaagaaaattaggcactggcacattg
gaatctgatattatgagcaatcactctagtcaggcacagcaaccgttgattaatgattct
tctataaatgttgacgaggcagtttccttgctcggttctggccatggattgacagttaag
atgtctagcttccaacctgagccaaatcagaatttgggtccacattatcctcatgaacca
tggaatatgccacatcacttctcacggtcagcacaccctctgaattccagcagcgggagg
ggaagtgatttccggtttcctttttcatcaggttctgtatcttcattgggtgatgacaaa
atggctccacttgttgacaaactgtcgaatgttgaatcacaagtcatcaggcccccagca
gttgcatctaagataggttcttttgctttggactcagttagtgctgaggcatggtcagcc
tccataccatcatcagctggggtatggcctccagcaaatgtacataaatctcatccacca
cctgtgtatccactgcagaaacagatcaggagtcaatatgatttgaaaaattctaccagt
aatgtcatgaatcaatgtctaaataagttgatgtatatgcctcagcagcattttagttct
gagggcaaggatctaagtttgatgaagccaccacaattgcatgatcagcatgctaatttg
aatcagcaaaaccacgcccaaccacagtcttttccttctcaggaggctcacaacaactct
cttccctctgtcccagcttcagtccaacctcatctactggcagcaccggtgaaccatggg
tacaatgctgtcatgagtatggctccggccaatcctgttcctgcagtgcaattaccttta
tcaatcaaagattttccgaacagctccttgcatttgctgaggggaaccttgccacctctt
cctccaggtcctcatccatcttctcaaataatacccatgcctcaaagcacaggccttgtt
acccctgggcaaccacaaagcactgcattttctggtttgattaattctctcatggttcaa
ggattgatctcatcgacaaaacaaacccctgtacaggattctgtgggactggagtttaat
gttgaccttcttaagatgcgccatgagtctgcaataagtgccctatatggcaatcttcca
agacagtgtaccacttgtggcctacggttcaagtgccaagaagagcatagtagtcatatg
gattggcatgtgactaagaaccggatgtccaagaatcgaaagcagaagccttctcgcaag
tggcttgtgagcgctagtatgtggcttagtagtgctgaggcattgggaactgatgcagtt
cctggatttgtaccctctgagactgttgtggaaaagaaggatgatgaagaaatggccgtc
cctgctgatgaagaccagaatgtgtgtgcattatgtggagagaaatttgatgatttttat
agtgatgaaacagaggaatggatgtacaagggggctgtctacatgaatgcaccggctggg
tctgcagctggcatggataggtctcagttaggtcctatagtgcatgctaaatgcaggtcg
gaatctactgtggttctccctgaaagatgtacacatgatgaagggggaaatactgaagag
ggtagtcagagaaaaagaatgcggagttaa
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