Mangifera indica (mango): 123220428
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Entry
123220428 CDS
T07684
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
minc03009
]
123220428
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
123220428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
HEAT
TPR_Trm732_C
XMAP215_CLASP_TOG
Htt_N-HEAT_1
Glyco_hydro_53
LAIKA
Chordopox_A30L
Motif
Other DBs
NCBI-GeneID:
123220428
NCBI-ProteinID:
XP_044498582
LinkDB
All DBs
Position
7:complement(8937518..8961039)
Genome browser
AA seq
2696 aa
AA seq
DB search
MATPSQALAVKSLNKNSGRRRFVFKSVSQRLDDIDINVFRSLDKVKTAPSEEGGSFFRDC
LYEWRELNTAEDFISLYVEIVPFVDKLPSVLYHKELIFSKLLGRLQMRARLSLEPILGLI
AILSRDLLEDFLPFLPRIVDSFVSLLESGADREPDIVEQIFTSWFYIMMYLQKYLIQDIT
SVLKITVKLRYYPKDYVQEFMAEATSFLLRKDRQQLKPGIRKIMFEVVKKPSPERKSGVS
GLLYHVMRGTASRFHSEAEHVLRLLLSNSVLSVGDKLNQGSIVVEVVISAFQRIGDNFEP
KELNLMSECLYQEITACLANGCLLHLSNLLSLLIAIIQIDKGCKFSDYQSVLEHVDILVR
KFVLPSGDGKEVDKLSEVIDKVLQLMLCTLDGIHRIDDMSTMSDCISQWAPVFKLSNSSL
LTFIRELLLKEPCIMYTFRVHILSAMNDMIETSSEEVMFLLLSFSERLHMNPQYNLLDGT
TEDILSRICNFLQEKISSLIMILRGNLSSIQIDETKLALMWGAIRCYPCILDVQTSSSLL
MDLIDALDLLTMSDGEIVAGVPKQIWQSLAGAALTSYSEWHRAKKVGLEETSKVLHIAKA
CKSSSQVLSAAADYLDYVHGITLQEDNSHKEYHPELKVEKAVDAVETFADNLCQSDKTIR
VATLRILCHYEPYTYEVSAFDEPPEKKMKIETGVSLPSNVDCHGCNVIQLLLSIETTPLS
ISTSRKIILSISRILMILSAGRVPEMYIPLLLNGVIGILHNRFSYLWNPASECLAVLLSK
HVGLVWDNFVDYLQQCQCMFQRSHNQLDRMSSESSKKPSDLVEHFNMFVYPASDSTPHAT
VLSLLLQSLQKISSVVESRSRQILSLLLEFLGYDSNDLASVGSFIPDVCKGKEWKVVLKE
WLNLLKLMRNPKSFYRSQFLKDVLQNRLLDENDAEIQLKVLDCLLIWRDGFLIPYDQHLK
NLINSKNMREEVTTWSLSRESVQIKDTHRTYLVPLVIRLLVPKIRKLKMLASRKHASICH
RKALLGFIAQLDVDELPLFFLLLIKSLHIIPKGADDDVFWTTEKYTMDNFYELNFLNYFT
VENLATLSWKKIHGFLHVIDDVFGVFDESHVIPFLHLLMGCVVHILVSCTSSLDVAKGSG
SSLIKDHSSTDLTIHEHGKPSGNNVLTSSAVKQLKDLRSLCLRIISSVLNKYDDHNYGCE
FWDLFFKSVKSLVDAFKQEGSSSEKPSSLFSCFLAMSRSHKLVSLLYREKNLVPDIFSIL
SVATASEAIVSCVLMFIENLLNLDIELADEDSGIKRLLLPNLETLICSLHYRFQSANNRK
FLKSSGETETRIFKLLSQYIKDPSTAIKFVDILLPFLVKGVKNSGFSVTVLDVLQSIIPA
VGTGSTKRILNAVSPLLVSVELEMRLSICHLLLELAKADPSVLPVAELVSQLNATSPEEM
NSLDYDSIVAAYDKIDISLFYTLEVGYELVILSHCVYDMSSEDLILRKSAQRILLLFVDF
SSLILDGEKCNGHESTRIVECSWTIASIQRIMNKFILKHIGEAMKSGSKVKKEWIDLLRQ
MILKLPQLSNLGSLRDLCSGDTEVDFFNNIIHLQKHRRVRALTRFRKVVSANSMPEDLLN
KVFVPLFFSMLFDVQDENVRSACSEALASISAVMEWKCYSVLLIRCFQEMEKNQQKQKIL
LRLFCSILDRFHFSQICSGEQAIYSLDALGANTISTSSSSVDDKFHGSMMVPEIQTWLHE
VMLPKVQKLLNFDSEKVNVDISRAALKLLKLLPGDIMDSQLPSIIHRISNFLKSRSDSIR
NSARLALADCLKELGLEYLKFILGVLRATLKRGYEMHVLGYTLNFILLKNLSNPIVGKLD
YCLEDLLAAVENDILGDVSEEKEVEKIASKMIETKKQKSFETLELIAKNITFRTHALKLL
SVVTTHLQMHLTPKRKSKLESMLNHIAAGIECNPSVDQTDLFVFIYGLIEDWMKEEIDLH
LSSASTVMNNHKSDAKEKSISSGRVIVTKSTCSHIITVFALGLLLKRLKNLRSSKHDEKH
LSMLDSFVTLLGNCLSSKYEDVLSASLRCLTSLVSLPLPSLESQADKIKETLLDIAQSSV
NSGSPLMQSCLSLLTKLLRSTKITLSSDQLHLLIQFPVFIDLERNPSDVSLSLLKAIVSR
KLVVHEIYDIVVRVAKLMVTSQVESIRKKCSQISLQFLLDYHLSDKRLQQHLDFLLANLS
YEHSSGREAVLEMLHAIIKKFPQTKLDEQSHTLFVHLVARLANDHDNKVRAMTGVAIKLL
IERINPHLLNSILEYGLSWYLGMKQQLWSAGAQVLGLLVEVMKRDFQRHISTVLPVTRNI
LQSTINKVGDGLLDLSDEATIPFWKEAYYTLLLLEKILCQFPNFILNRDFENIWEEICEL
MLHPHTWLQNRSNRLIALYFSALTESGREHEEKGRENLFLMKPSRLFMIAVSLCCQLESQ
LTFDEAVGNWITQNLVSAICTMHSLREQKECMDPHSDWATLGAHEQGLFLRAFKLLDSRK
GKGIFLSIISKTAEQNNQDQPKDFQFLLVSNLLRKLGKIALQKEAIQMKIVFNSFRLISS
EIGPSHCQLYVCQMLPSLYKVCEGFAGKLITDDMKQFAHEVCDSIRNTVGSQNFIQVYNE
IRKNLKQKRDKRKQEEKVMAVVNPARNAKRKLRISAKHRVNKKRKIMAMKMGRWLR
NT seq
8091 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccgtcacaagcgctggccgttaagtctctcaacaagaattctggccgccgc
cgctttgtcttcaaaagtgtctcacaacggttagatgacatcgatatcaatgttttccga
agccttgataaagttaaaactgcgccttctgaagaaggtggctcctttttccgtgattgt
ctctacgaatggagggaattaaatactgcagaggacttcatttcattatatgtggaaata
gttccttttgtagataagcttccctcagtattgtaccacaaggaactgatattctccaaa
cttcttggtagattacaaatgagagcaagactatcacttgagcctattttggggttgatt
gcaattttatcaagagatctccttgaggattttttaccgtttttgccgaggattgttgat
tctttcgtttctcttcttgaaagtggtgctgatagagagccagatattgttgagcagatt
tttacatcttggttttatattatgatgtatttgcagaaatatctcattcaagacattaca
agtgtgcttaagattactgtaaaattaagatattacccgaaggattatgtccaagaattt
atggcagaagctacatcattcttgctgagaaaggaccgtcagcagctaaaaccaggtatt
agaaagatcatgtttgaggttgtgaagaaaccatcacctgaaagaaaatctggagtcagt
ggtttactttatcatgttatgagaggaacagcatcaagattccattcagaagcagagcac
gttttgaggctattactgagcaattcagtactttctgttggtgataagttaaaccaaggt
tcgattgttgtcgaagttgtgatctcagcttttcagagaataggtgacaattttgaaccc
aaggaattaaatttgatgagcgagtgcttatatcaggaaataactgcctgtttagctaat
ggatgcttgttgcacctaagtaacctattgtcgctgcttattgctatcattcagattgat
aagggttgcaagttttctgattaccagtcagtgcttgagcatgtggatatacttgttcga
aaatttgtcttaccttcaggtgatggtaaggaagttgacaaattatccgaagtcattgat
aaagttctgcaactcatgctatgcactctggatgggatacacagaattgatgatatgtcc
actatgtctgactgtatttcacagtgggctcctgtttttaagttgagtaattcaagtttg
ttgacatttatcagagagctactattgaaagaaccttgcataatgtatacattcagagtt
catattttaagtgcaatgaatgatatgatagaaacttcaagtgaagaagttatgtttctg
ttattatccttctctgagagactgcatatgaaccctcaatacaacttgttagatggaaca
actgaggacatattatctagaatttgcaattttctacaagagaaaatctcttccctaata
atgattcttcgtggtaatttatcatctattcaaattgatgagaccaagttggctctgatg
tggggagccatcaggtgctatccttgtatcttggatgttcaaacaagctcatctttgctt
atggatttgatagatgcacttgatcttcttacaatgagtgatggcgaaattgttgcaggc
gtccctaaacaaatttggcaaagcctagccggtgcagctttaacttcatatagcgaatgg
catcgggcgaaaaaagttgggcttgaagaaactagtaaagttttgcatatagcgaaagca
tgcaaatcatcctcacaagtattaagtgctgctgctgattatttggattatgtgcatggg
attacattgcaagaagataacagccataaagaataccacccagagctcaaagtggaaaaa
gctgtggatgcagttgaaacctttgctgataatttgtgccaatcagacaagactattcgt
gttgcaactcttagaattttatgccactatgaaccttatacttatgaggtttcagctttc
gatgagccccccgagaagaaaatgaaaatagaaactggggtttctcttcccagtaatgtg
gactgtcatggatgtaatgttattcagctcctcctctccattgagacaactcctctttca
atatctactagcaggaaaattatcctatcgatatctagaatactgatgattctatcggct
ggaagagttcctgaaatgtatatacctctgttgttgaatggagtaattgggatcctccat
aatcgttttagctatctttggaatccagcttctgagtgccttgcagttttgttgagcaaa
catgtcggacttgtttgggacaattttgttgactatcttcaacaatgccaatgcatgttt
caaagatctcataatcaacttgacaggatgagttctgagtcatctaagaagcctagtgat
ctggttgaacattttaatatgtttgtttatcctgcatctgatagcactccacacgcaaca
gtattgtccttgttgctccagtctctacagaaaatttcttctgtagttgagtctcggtcg
cggcaaattttatctctgttgttagaatttctgggctatgatagcaatgatcttgcaagt
gtgggatcattcattccagatgtttgcaaaggtaaagagtggaaagttgtcctgaaagaa
tggttgaatttgttgaaactgatgcgaaatcccaagtccttctatagaagtcaatttctg
aaagatgttctacaaaataggcttctggatgaaaatgatgctgaaatacaattgaaggtt
cttgattgccttttgatttggagagatggtttcttgattccgtatgatcagcatcttaaa
aacttgattaattcaaaaaatatgagagaagaagttacaacatggagtttatcgagagaa
tctgttcagataaaagacacccacagaacttatcttgtgcccttagttattcgtctcttg
gtgccaaaaatcagaaaattgaagatgcttgcttctcgaaaacatgctagtatatgtcac
cgaaaggcactgcttggtttcattgctcaattagatgttgatgaacttcctcttttcttc
ttgttgttgataaagtccttgcatattattccaaagggtgctgatgatgatgtattctgg
accacagagaagtacactatggataacttttatgaactgaatttcttaaattatttcact
gtggagaacctagcaaccttgtcctggaagaagattcatggttttctgcatgtgattgat
gatgtttttggagtttttgatgaatcacatgttataccttttcttcatctgttgatggga
tgtgttgttcatatattggtgagctgcacttcaagtcttgatgttgcaaagggtagtgga
tcctctctaataaaagatcattcaagcactgacctgactatacatgagcatggcaaacca
tcaggaaacaatgtcctgaccagctcagctgtgaagcagttgaaggatctaagatctctg
tgccttagaatcatttccagtgttctcaataagtatgatgaccataattatggttgtgag
ttctgggatcttttctttaagtcagtgaaatctctagttgatgctttcaagcaggagggt
tctagtagtgagaaacccagctcactgttctcttgttttttggctatgagtagaagccac
aaacttgtatcgctattgtatagggaaaagaatctggttcctgatattttttcaattcta
agtgttgcaactgcctctgaagccattgtatcttgtgttttgatgttcattgagaatctc
ctgaatctcgatattgagttagctgatgaggatagtggtataaagaggcttctgcttcca
aaccttgagacacttatctgcagcttgcattatcgttttcagagtgcaaacaacaggaaa
tttcttaaatcttctggagagacagagactagaatttttaaattgttatcccaatacata
aaagatccatcaacggcaataaaatttgtggatatcttgctacccttcctagtgaaagga
gttaaaaattctggtttctcagttactgttttggatgttcttcaaagcatcataccagca
gtaggaactgggagcaccaaaaggattcttaatgctgtctctcctctacttgtttctgtt
gaattggaaatgcggttgtctatttgtcatcttcttcttgagcttgctaaagctgatcct
tctgtgctcccagtggcagaacttgtcagtcagttgaatgcaacttctcccgaggaaatg
aacagccttgattatgattctattgttgctgcatatgataagattgacattagcttattt
tatactttagaagtgggttatgaattagtaatattgtcacattgtgtgtatgatatgtca
tcagaagatttaattctaaggaaaagtgcacagaggatattgctcttatttgttgatttt
tcttctctaattcttgatggagaaaagtgtaatgggcatgagtcgaccagaatagttgaa
tgctcctggactattgcatccattcagcgtataatgaacaagtttattttgaagcatata
ggggaagcaatgaagagtggaagtaaagttaaaaaggaatggattgacttactgagacaa
atgatattaaagcttccacaattgtcaaacctaggttcattgagagatctgtgctcaggg
gatactgaagttgatttttttaataatattattcacctgcagaaacatagaagagtgcgg
gcactgacacgttttaggaaagttgtcagtgcaaacagtatgccagaggacctcttgaat
aaggtgtttgtcccactattttttagtatgttgtttgatgtacaagatgaaaatgttaga
agtgcatgctctgaagctcttgcttcaatttctgctgttatggaatggaagtgctactct
gtgttgttgattagatgctttcaggagatggaaaaaaaccaacaaaagcaaaagattttg
ctgcgattattctgctctatattggaccgattccatttctcacaaatttgttctggtgaa
caagccatatactctttggatgctttaggtgctaataccattagtactagttcttcatca
gtagatgacaaatttcatggttcaatgatggtcccagagatacagacatggcttcatgaa
gtcatgctcccaaaagtacaaaaattattgaattttgattctgagaaggtcaatgttgac
atcagtcgggctgcactgaaactactgaagttgcttccaggagacattatggactcacag
cttcctagtatcatccatcgtatttcaaactttttaaagagtcgttcagattccatccgt
aatagtgctagattggctttggccgattgtttgaaggagcttgggctggaatacttgaaa
tttatcttaggggtcttgcgagctactttgaagcgagggtatgagatgcatgtactggga
tatacacttaattttattttattgaagaatctttcaaatcccattgttgggaagttggat
tattgtttggaagatctccttgctgcagttgagaatgatattcttggagatgtttctgaa
gagaaagaggtggaaaaaattgcttccaaaatgatagaaactaagaagcaaaaatctttt
gagaccctggaattgattgccaaaaatataacatttagaactcatgccttgaaacttctt
tctgttgtaacaactcatttacagatgcatctgactccaaaaaggaaatcaaaattggaa
agtatgcttaatcacattgctgctgggattgagtgcaatccatctgtggatcagactgac
ttatttgtctttatatatggtctaattgaagactggatgaaagaggaaattgatttgcat
ttaagttcagccagtacagtaatgaataaccataaaagtgatgcaaaagagaaatctatc
tcttcaggccgagttattgttactaaatcaacatgttcccatataattacagtgtttgct
cttggacttttgctgaagcgtttaaagaatctgagatcgagcaagcatgatgaaaaacat
ttatcgatgctagattcttttgtgacactgctaggaaattgcttgagttctaagtatgaa
gatgttttgtcagcatctcttagatgccttacttcattagtaagcctccccctgccatct
cttgaatctcaggctgataaaataaaggaaactctgctggatattgcccaaagctcggta
aactctggaagtcctttgatgcagtcgtgtctaagcttgttaacgaagcttctgcgcagc
actaaaattacactttcatcagatcaacttcatctgctaattcagtttcctgtgttcatt
gatcttgaaaggaatccttctgatgtttctctttcacttttgaaggcaattgttagtcgc
aagctagtcgttcatgagatatatgatattgtagttcgagttgcaaaactgatggtaaca
agtcaagttgaatcaattcggaagaaatgtagtcagatttcattgcagttcctacttgat
tatcatctatcagataaacgtttgcaacaacatttagattttctgctagcaaatctgagt
tacgagcattcaagtggaagagaagctgtgcttgaaatgctccatgctattataaagaaa
tttccacaaacaaaattggatgagcaatctcacacattgtttgtccatttagtggctcgt
ttggctaatgaccacgataataaagttcgtgccatgactggtgtggccataaagcttctt
attgaacgtattaacccacatttgcttaattcgattttggagtatggtctatcatggtat
ttgggcatgaagcagcaactctggagtgctggtgcacaggtcttgggattactagttgaa
gttatgaagagagactttcaaaggcatataagtactgtattgccggtgacgagaaacatt
ttgcagtcaactataaataaagttggagatgggctattggatctttctgatgaggctacc
atccctttctggaaagaggcatactatacacttttgctactggagaagatcctatgtcag
ttccccaattttatcctgaacagggattttgagaatatttgggaagaaatttgtgagttg
atgctgcacccacacacttggttgcaaaacagatcaaatcgcctcatagccttgtatttt
agtgctttaactgaatctggcagagaacatgaagagaaaggaagagaaaatttattctta
atgaagccgagtagactctttatgatagctgtttctctatgctgccagctggagtcccaa
ctcacctttgatgaggctgtcggcaactggattacccaaaatcttgtgtctgcaatttgt
accatgcattctttgagagaacaaaaggagtgcatggaccctcacagtgactgggccact
cttggagcgcatgaacaaggcctgtttcttagagctttcaagttacttgattcaagaaaa
ggaaaaggaatatttttgtctattatctccaagacagctgaacaaaataatcaagaccag
cctaaggattttcaatttttgcttgtctctaatttgctcagaaagttgggaaagattgct
cttcagaaggaggctattcagatgaaaattgtcttcaatagttttagactaatttcatca
gaaattggtccaagccactgtcaactttatgtgtgccaaatgctgccttcattgtataaa
gtttgtgaaggatttgctggaaagcttatcactgatgatatgaagcaatttgcacacgaa
gtatgtgatagcatacgaaacacagtaggcagtcagaattttatacaagtttataatgag
atcagaaagaatctgaagcaaaagagggataaaaggaagcaagaggaaaaggtcatggct
gttgtcaacccagctcgaaatgccaagaggaaactgaggatatcagctaagcatcgtgtc
aacaagaagagaaagattatggcaatgaaaatgggaagatggctgcgatag
DBGET
integrated database retrieval system
