Mangifera indica (mango): 123220482
Help
Entry
123220482 CDS
T07684
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
minc
Mangifera indica (mango)
Pathway
minc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
123220482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
123220482
NCBI-ProteinID:
XP_044498651
LinkDB
All DBs
Position
7:19860600..19867467
Genome browser
AA seq
1135 aa
AA seq
DB search
MASSSKEGNSQKQQAQSSGTANIRLHHNTVTDSMAVSKAIAQYTVDARLHAVFEQSGESG
KSFDYSQSVRTTSQSVPEQQISAYLSKIQRGGHIQPFGCMIAVDEPTFRVIAYSENAREM
LGLTPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREITLLNPVWIHSKNSGKP
FYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTV
VESVRQLTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNR
VRMIVDCHASPYCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGN
DEEAIGRRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKH
VLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLAVTPTETQIKDLV
DWLLTFHGDSTGLSTDSLSDAGYPKAATLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW
GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEA
SNSKAVVNAQLGVLELQGVDELSSVAREMVRLIETATAPIFAVDVNGLINGWNAKVAELT
GLPVEEAMGKSLVHDLVFKEYEETVDNLLHRALRGEEDKNVEIKLRTFGSENHKKAVFVI
VNACSSKDYTNSIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDEN
TCCLEWNTAMEKLTGWPRGEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHNAFGGQDTD
KFPFAFFDRNGKYVQALLTANKRLNMEGQNVGAFCFLQIASPELQQALKVQRQQEKKCFA
RLKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSTACEKQMSKIIKDVDLET
IEDGSLELEKSEFFLGSVINAVVSQVMLLLRERSLQLIRDIPEEIKTLAVCGDQARIQQV
LADFLLNMVRYAPTTEGWVEIHVRPTLKQISEGLTILHAEFRIVCPGEGLPPELVQDMFH
TSRWMTQEGLGLSMCRKILKIMNGEVQYIRESEKSYFLIILELPLPRRGSKSVVE
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaagtagtaaagagggaaattctcaaaagcaacaagcacaatcttcaggtaca
gccaacataaggctccatcataacactgtaacagactctatggctgtgagcaaagctatt
gctcagtacaccgttgacgctaggctacatgcagtttttgaacagtctggagagtcaggt
aagtcctttgattattcgcagtctgttagaaccacaagccagtctgttccagaacaacaa
atcagtgcttacttgtcgaaaattcaaaggggtggacatatccaaccctttggttgtatg
atagccgtcgatgaaccaacctttagagtcatagcttatagtgaaaacgcccgtgaaatg
ttgggtctgactcctcaatcagtgccgaatcttgaaaagcaagaaattttaacaattggg
actgatgtacggactctcttcacttcatcaagttcagttttacttgagaaagccttcggt
gcaagggaaattacgctgttgaaccccgtttggattcattctaagaattcggggaaacca
ttttacgctattttgcataggattgatgtagggatagttatcgatttagagcctgcaagg
actgaggatcctgctctctctattgcaggagctgtgcagtctcagaaattggctgtgcgg
gcgatttcgcaattacagtcacttcctggtggagatgttaaactgttatgtgatactgtt
gttgagagtgtgaggcagctaacagggtatgatagggttatggtgtataaatttcatgag
gatgagcatggtgaggttgtggctgagagtaaaaggcctgatttggagccttatattggg
ttgcattatccagctacggatatccctcaggcatcacgatttttgtttaagcagaatagg
gttaggatgattgttgattgtcatgcttccccatattgtgtaattcaggatgaggggctt
atgcaacctttgtgtttagttggttcaacacttagggcacctcatggttgtcacgcacag
tatatggctaatatgggatcaatcgcctcgttagccatggcagttgttattaatggaaat
gatgaggaagctattggtaggaggaactcgaccaggctttggggtttggttgtttgccat
catacttctgctcggtgcatcccgtttccactccgttatgcttgtgaattcctgatgcaa
gcttttggactccaattgaatatggaattgcaattggcatctcagttgtctgaaaaacat
gttctgaggacccaaactctattgtgtgatatgcttcttcgtgattctccaactggcatt
gttactcagagtcctagtataatggaccttgtcaagtgtgatggggcagcactctactac
caagggaagtactaccctttagctgtgaccccgactgaaacccagataaaggatcttgtg
gattggttgttgacttttcatggagattcaactggtttaagcacagacagtttgtctgat
gcagggtaccctaaggcagccacgcttggagatgcagtttgtgggatggctgttgcttat
atcaccaaaagggactttctattctggttccggtcccatactgcaaaagaaataaaatgg
ggtggtgctaagcatcaccctgaggacaaggatgatggacaaaggatgcatccacgttct
tcgttcaaggcatttttggaagtggtaaagagccggagtttgccatgggaaaatgctgaa
atggatgctattcactctttgcagctgattctgcgagactcatttagagatgctgaagca
agcaattctaaggctgttgtaaatgcacagcttggggttctagagttgcaaggagtggat
gaactgagttcagttgccagggaaatggttaggttgatagagactgcaactgctcccata
tttgctgtagatgtcaatggcctcattaatgggtggaatgcaaaggttgcagagttgact
ggcttaccagttgaggaagcaatggggaagtccttggttcatgatcttgtttttaaggaa
tatgaagaaactgttgacaaccttctgcatcgtgcgttgagaggtgaggaagacaagaat
gtcgagattaaattgaggacattcggctcagaaaatcataagaaagctgtcttcgtgata
gtcaatgcttgctctagcaaggattacacaaatagcattgttggagtttgctttgtcggt
caggatgttacgggtcagaaagtggtgatggacaaatttattcacatacaaggtgattac
aaggccattgttcacagtcccaatcctttgatccctcccatatttgcttcggatgaaaac
acgtgttgcctggagtggaacactgccatggaaaagctcactgggtggcccaggggtgag
atcattgggaagatgttggttggggaagtttttggcagttgctgccggctcaagggtcca
gatgctttgacaaagttcatgattgtcttgcacaatgcatttggaggacaggatacagac
aagtttccttttgccttctttgatcggaatgggaaatatgtgcaagctcttttgacagcc
aacaaaaggctaaatatggaaggccagaatgtaggagctttctgcttcttgcaaattgct
agtcctgaattgcagcaggctctgaaagtccaaaggcagcaggagaagaaatgctttgca
aggttgaaagagttggcttacatttgccaggaaataaagaatccattaagtggtatacgc
tttactaactccctgttggaggctacagacttgactgaagatcagaagcagttccttgag
actagtactgcttgtgagaagcagatgtcaaagatcataaaggatgtagacctggaaacc
attgaagatggttcactggagcttgagaagtctgagttctttcttgggagtgtcataaat
gctgttgttagccaagtaatgttgttactgagagaaagaagcctacaactgattcgcgat
attcctgaagaaatcaaaactttggctgtttgtggtgatcaggcaagaattcaacaggtt
ttggcagattttttgctaaatatggttcggtatgctccaacaactgaaggttgggtagag
attcatgttcgtccaacgttaaagcaaatttctgagggactaacaattctgcacgctgaa
ttcaggattgtatgccctggtgaaggtcttcccccagaactggttcaagacatgtttcat
accagtcgatggatgactcaggagggcctagggctgagcatgtgcaggaagattttgaag
atcatgaacggtgaagtccaatatatcagagagtctgaaaaatcttatttcttaatcatc
ctggaacttccactccctcgaagaggatcaaagagtgttgttgaatag
DBGET
integrated database retrieval system
