Mangifera indica (mango): 123220697
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Entry
123220697 CDS
T07684
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123220697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123220697
03009 Ribosome biogenesis [BR:
minc03009
]
123220697
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123220697
Spliceosome [BR:
minc03041
]
Complex A
U1 snRNP components
U1 related factors
123220697
Complex B
123220697
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
Pre-60S particles
Helicases
123220697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
123220697
NCBI-ProteinID:
XP_044499191
LinkDB
All DBs
Position
7:20200233..20207074
Genome browser
AA seq
1142 aa
AA seq
DB search
MAEAASASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPAALPPPLPPG
HPPATTTPKLAPLPVAHSMQPNGVMTQHGQPHVAQQQGQQMSQLPQQPGQVVAQVSDQQD
PQQQGSQFGQAMQHPGQFTSHMRPQMMPYPGQQMPQQLGQQWPQQAGQQSVQHLNSQMTQ
PQQGHQYAHQQYLPYQQSIHPQGQQSSQQQTQLGSGQQFASQQEYNKAAISKREEIDFSI
GSQVGFSPSQYKQAGASSSQNLPGGTNSVQISQTGVQLGQAQQFSGSSVNLQQPNPMAHP
LQQTGKDLPHQPLGPRYQNQMGLGMMHNKQPNVPPFGLKMGYEDNVHGRTGSDYIFNDNK
EGQQPKLAALPMARSQQETRVSGAAFQNITPGYSGGLNAVPGNAIHDMYGHAGPFSNTAM
MRPPFMGSSGVTNLSPAEVYCQQHEVTATGDNVPAPFMTFEATGFPPEILREVHSAGFLS
PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFMLLRQRHNNPRYGPTVLVLAPTR
ELATQIQDEANKFGRSSRVSCTCLYGGAPKGPQLRELERGADIVVATPGRLNDILEMKKI
DLGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKDVRKIAGDLLVNP
VQVNIGSVDELSANKAITQHVEVVPQMEKERRLLQILRSQERGSRVIIFCSTKRLCDQLA
RNIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP
TGIEDYVHRIGRTGRAGATGVAYTFFSEQDWKYAADLIKVLEGANQRVPPEVREIALRGG
PGFGKDRGGMSRFDAGSGGGGGHWDSGGRGGMRDGGFGGRGGMRDGGFGGHGGMRDNNFG
GRGGMRDGNFGGRGGVRDSGLGGHEGRGEMFSGRGNRGRGFGGPSGGNVGWGRNDRGPHD
RYSNSMDGRGRGRGRGRFDNRRETDRSRGRSYSDSPERVRTWGYSRSRSRSGSRSRSRSR
SRSWSRSRNRSRSRSWSRGHSRSPSHDRSRSFSHDRSCSRSRSRSRSYDRFERSHDRKER
RVSGFDVLPETLGSPMSLAAPMSTGLQGGVVLATEPASLPTVECSENEPVLPETGTDLDQ
QL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcagcttcagcttctcttggcccgcggtacgcccctgatgatccgactctt
ccaaaaccttggaagggcttgattgatggaagtacaggtcttttatattattggaatcca
gaaactaacattacccagtatgaaaagccagctgcattacccccgccattgccgcctggc
catcctcctgctactactacacctaaactggctcctctgcctgtggcccattcaatgcag
ccaaatggggtgatgactcagcatggtcagccacatgtggcacaacaacagggtcaacaa
atgagccagttacctcagcagccggggcaggtagtggcacaggtttctgaccaacaggat
ccacagcagcagggttcacagtttggtcaggccatgcaacacccggggcaatttacatcg
catatgagaccacaaatgatgccatatcctggccagcaaatgcctcaacaattgggtcag
cagtggccacagcaagcagggcaacaatcagttcaacatttaaattcacaaatgacgcaa
cctcagcaaggacatcagtatgcacatcagcagtacttgccatatcaacagagtatccat
ccgcaggggcaacaaagttcacagcagcagacacaacttggttcaggacagcaatttgca
agtcaacaagaatataataaggcagcaatttcaaaaagggaggaaattgatttttcaata
ggaagccaagtagggttttcgccatcccagtataaacaggctggtgcttcgtcttctcaa
aacctccctggtggaacaaattcagttcagatatcacagacaggtgtacagttgggtcaa
gctcagcagtttagtggatcctcagtcaatttgcaacaacctaatcccatggctcatcca
ttgcagcaaacgggaaaggatttgcctcaccagccgcttggtcctaggtatcaaaatcag
atgggcctaggaatgatgcataataagcagcctaatgttcctccatttgggttaaagatg
ggttatgaggataatgtgcatggtagaactggaagtgactacatttttaatgacaacaag
gaaggacagcagccgaagcttgcagccttacccatggcaagaagtcagcaggagacaagg
gttagtggtgctgcttttcaaaacatcacacctggctattccggtggattgaatgctgta
ccggggaatgccatacatgatatgtatggtcatgctggtccattctcaaatactgctatg
atgaggccaccatttatggggtcttctggtgttactaatctctctcctgctgaagtctat
tgtcaacaacatgaagttactgcaacgggtgacaatgttccagcacctttcatgaccttt
gaggccactggttttcccccggagatactgagagaggtgcattctgctggtttcttgtct
ccaactccgatccaagcacagacatggcctatagcactacaaggtagggatatagtagct
attgcgaaaacaggttctggtaaaacattgggctacctgatccccgccttcatgcttctt
agacagcgacataataatcctcgatatggtccaacagtgttagtcttggctccaaccagg
gagctagctacccaaatacaagatgaggccaacaaatttggtcgatcctcaagggtttct
tgcacgtgcttgtatggtggagctccaaagggtcctcaattgagagaattagagcgagga
gctgatattgtagtggcaactcctggtcgactgaatgatattcttgaaatgaaaaagatt
gaccttggacaagtttcattgcttgtgcttgatgaggcagatcggatgcttgacatggga
tttgaaccgcaaatccgtaaaattgttaatgagatacctccacacagacaaactctcatg
tacacagcaacctggcccaaagacgtaagaaaaattgccggtgatttacttgtgaatcct
gtccaggtgaacattggcagtgttgatgagctctctgcgaacaaggctatcacacagcat
gttgaagtagttccacaaatggagaaggagaggcgcttgctgcagatccttagatcccaa
gaacgaggttctagggtcataatattctgctctaccaagaggttgtgtgaccagcttgca
cggaacattggacgtaactttggggcaattgcaatccatggagacaagtctcaaggtgag
agagattgggtattaaatcagttccggagtggaaagtccccaatactggttgcgactgat
gttgcagcccgtgggcttgacattaaagatataagggtagtgattaactatgattttcct
actgggattgaggattatgtccatcgaattgggagaactggtagagcaggtgcaacaggg
gtggcctacacctttttctctgagcaggactggaagtatgctgctgatttgattaaagtt
cttgagggtgccaatcagcgtgtgcccccagaggtgcgagagatagctttgcggggtggg
cctggttttggcaaagatcgaggtgggatgagtcgttttgatgctggtagtggtggtggt
ggtgggcattgggattctggtggccgaggtggcatgagagatggtggttttggtggtcgt
ggtggcatgagagatggtggttttggtggccatggcggtatgagggacaataattttgga
ggtcgtggtggaatgagggatggcaactttggtggccgaggcggtgtaagggacagtggt
ttaggtggccatgaagggagaggtgagatgttttctggacgtggaaacaggggtcgggga
tttggtggccccagtggtggtaatgttggttggggcaggaatgatcgaggtccgcatgac
cggtatagtaacagtatggatgggcgtggacgtggtcgtggaaggggtcgatttgataat
aggagagaaactgatagaagtaggggcagaagttatagtgatagtccagaaagggttcgt
acatggggttatagcagaagtagaagtagaagtggaagtagaagcaggagtagaagccga
agtcggagctggagccgaagccgaaaccgaagccggagtcggagctggtcccgtggccat
agccgcagccctagtcatgatcgcagccgcagttttagccatgatcggagttgcagtcgc
agccgtagccgcagtcggagttatgacagatttgagaggtcacatgaccgtaaggaacga
agagtttctggttttgatgttcttcctgagacactggggtcacccatgtctttagctgct
cctatgtctacaggtttgcaaggtggtgtggttttggcaactgagcctgcatcattaccg
acagtagaatgttctgagaatgagccagtgctccctgagacaggaacagatctggatcaa
caactctaa
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integrated database retrieval system
