Mangifera indica (mango): 123221099
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Entry
123221099 CDS
T07684
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123221099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123221099
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123221099
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123221099
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
123221099
NCBI-ProteinID:
XP_044499731
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Position
7:complement(14436920..14448143)
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AA seq
892 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVGELESQIDNFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYSTLPLDKVES
LEDLVTIGPPGLTKGAPALSLKTSLAASASQIPVTATSTHQQGTSVPEQVEDTASQDSNS
EIVSRTPSSKSSGLNSSTASTPAVGQTTPITVSGSTHNLSSVSNASAVLSGSSSVRGVLD
NTSAISSSPPVNLTNPTKEEDIVSFPGRRSSPSLADVRGIGRGSLSSLPSSSIPLNSATA
VPSNGNLRSVPSVSDMAKRNILGVDERLGSRGMAQSLVSPLSNRMMLSQAAKGNDGTGSV
DSNNAGEGMAIGSRVFSPSVNMQWRPGSSFQNQNEPGQFRGRTEITPDQREKFLQRLQQV
QQQNHSTLLGIAGANNKQFSSQQQNPLLQQFTPNSSMSPQPGLGLGVQAPVLNTVTSSSL
QQQPSSIHQQASQPSLIPSGQKDAEVGHLKVEEQQQQQNLPEESTVESAPSPGLCKNLVN
EDDIKVSYAMDSPAGVSGPLTEPVQVVRDVDLSPGQPLQSSQPSGGLGVIGRRSVSDLGA
IGDNLNGSTVSYGAMHDQMYNLKMLESAFYKLPQPKDSERARSYIPRRPAVTPHNYPQVQ
APIVNNPAFWERLSLDSSNDTLFFAFYYQQNTFQQYLAAKELKGQSWRYHRKYNTWFQRH
EEPKVATDEYEQGTYVYFDFHIASDDPQHGWCQRIKTEFTFEYNYLEDELMV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcgcaagctccaaggcgagatcgatcgagtgcttaagaaggtccaagaa
ggtgtcgacgtcttcgatagtatctggaacaaggtatatgacacagacaatgcaaaccag
aaggagaagtttgaagctgacttgaagaaggagatcaagaagctgcagagataccgtgat
cagatcaagacatggattcaatctagtgagatcaaagataagaaggtcagtgcttcttat
gagcaggctctggtggatgctcgtaagcttattgagcgtgaaatggaaagatttaagata
tgtgaaaaggaaactaagacaaaagcattttctaaagaagggttgggacaacaaccaaaa
actgatccaaaggagaaggctaaggcagagacaagggattggttgaataatgtggttggg
gagttggagtcccagattgataattttgaagctgaaattgaagggttatctgtgaagaaa
gggaagacaaggccacctagattgacacatttagagacttctattacacggcacaaggct
catattatgaagttagaattgatcctgaggctactagataatgatgaactaagtccagag
caggtcaatgatgttaaagacttcttggatgactatgtggaacgtaatcaggaggatttt
gaagaatttagtgatgttgatgagctttacagcacattaccgctagacaaggtggaatcc
cttgaagatttggttacaattggtcctccaggccttactaagggtgctcccgctcttagc
ctgaagacttccttggctgcgtcagcatctcaaatacccgttactgccacttccacgcat
cagcagggtacttctgtcccagaacaagttgaagatacagcttcccaggatagtaattca
gaaatagtctctaggacaccatcttcaaaaagtagtggacttaattcttcaactgcatca
actccagctgtgggtcaaacaacccccatcactgtcagtggctcaactcataatttgtca
agtgtgtcaaatgcttcagctgtactttcaggttcaagttctgttcgaggtgtattggat
aacacaagtgccatcagttcttcaccgccagtgaatctgacaaatcctactaaggaagaa
gatattgtgagcttcccaggccgtagatcatctccatctcttgcagatgtgaggggcatt
ggaagaggtagcctctccagcctaccttcatccagcatacctcttaattctgccacagca
gttcctagcaatggaaaccttcgctcagttccttcagtttcagatatggcaaagagaaat
attttgggagttgatgagagacttggcagtcgtggcatggcacaatcgctggtctccccc
cttagtaaccgaatgatgttgtctcaggctgccaagggtaatgatgggactggatcagtt
gattccaataatgctggagagggtatggcaattggtagcagagttttttccccttcagta
aacatgcaatggaggcctggaagttcctttcaaaaccagaatgaaccggggcagtttcgg
ggaagaactgaaattacacctgatcagagggagaaattcttgcaacggctccaacaagtg
cagcaacaaaatcacagtacccttcttggcattgctggtgcaaataataagcagttttct
tcccaacaacaaaacccactgttgcagcagtttactccaaactcatccatgtctccacaa
cctggtctgggacttggggttcaggcaccagtactcaatactgttacatcttccagcttg
caacagcagccaagttctatccatcaacaagctagtcaaccgtcattgatacctagtggt
cagaaagatgcagaagttggccacttgaaagttgaggagcagcagcaacagcagaattta
cctgaggaatcaactgttgaatctgctcctagtcctgggctttgcaagaaccttgtgaat
gaggatgatatcaaagtttcatatgcaatggattctcctgcaggagtgtctggccctttg
acagagcctgttcaagtagttagagatgttgatttatctcctgggcaacccttacagtcc
agccagccttctggtggtcttggtgttattggtcggagaagtgtttctgatcttggtgcc
attggcgataatttgaatggttcaactgtgagctatggagcaatgcacgatcagatgtat
aatttgaagatgcttgagtctgcattttataaacttccacaaccaaaggactcagagcgt
gccaggagttacattcctaggcgccctgcagtgacacctcataactatcctcaagttcag
gcacccattgtgaataacccagccttttgggagcgattgtctctggatagtagtaatgat
acactgttctttgctttctactatcaacagaacacattccaacaatatctggctgcaaaa
gagctaaaagggcaatcttggaggtaccacagaaaatataatacatggttccaacggcat
gaggagccaaaagttgctactgatgaatatgaacaagggacttacgtgtactttgatttt
catattgccagtgatgatccccaacatggatggtgccaaagaattaagacggagttcact
tttgagtacaactatcttgaagacgagctaatggtatag
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