Mangifera indica (mango): 123222926
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Entry
123222926 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123222926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123222926
03012 Translation factors [BR:
minc03012
]
123222926
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123222926
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123222926
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123222926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
123222926
NCBI-ProteinID:
XP_044501891
LinkDB
All DBs
Position
1:complement(21695479..21705192)
Genome browser
AA seq
1035 aa
AA seq
DB search
MSQRFLGANITLVSSKHFFSFLAAPTTQRFSSPISITFAMSYRPNYQGGRRGASSGSGAG
RRGGGGRGGGRGGGRGGEQRWWDPVWRAERLRQQAAKMEILDENEWWGKMEQMKNGEEQE
MIIKHNFSRADQQTLSDMAHQLGLYFHAYNKGKTLVVSKVPLPMYRADLDERHGSTQKEI
WMSTEIERRVGNLLNNSQGSSSVNNSGVAPDQGGKQVPPNVKVANPVSVEYTDANKEKLN
FELKERQEKLMVGNGVKAVQSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLP
QFILEEEISGLRGADCNIICTQPRRISSISVAARISSERGENLGETVGYQIRLESKRSDQ
TRLLFCTTGVLLRQLVEDPDINHVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL
MSATINADLFSKYFADAPTIHIPGLTFPVADLFLEDVLQKTGYNIKSEYESFQGNSRRKR
REQDSKKDHLTALFEDVDIDSTYKNCCASTRASLEAWSGSQLDLGLVESTVEYICRHEGD
GAILVFLTGWDDISKLIDKIKVNRFLGDSSKFLVLPVHGSMPTINQREIFDRPPPNIRKI
VLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASARQRRGRAGRVQ
PGVCYKLYPRIIHDSMLEYQLPEILRMPLQELCLHIKSLQLGTIGTFLAKALQPPDTLSV
QNAIELLKTIGALDDMEDLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAH
RDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGYKDAKRNRRERDFCWENYLSPA
TLQMMEDMRNQFLDLLSHIGFVDKSKGANAYNQYSHDLEMVCAILCAGLYPNVVQCKRRG
KRTAFYTKEVGKVDIHPASVNAGIHTFPLPYMVYSEKVKTTGIFIRDSTNISDYALLLFG
GSLIPGKTGEGIEMLGGYLHFSASKSVLELIKKLRAELDKLLNRKIEEPGFDLSVEGKGV
VSAVVELLQSQNVHY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcggttcctcggtgccaacatcactctcgtctcttccaaacacttcttctca
tttttagccgcgccaacgacacaaagattttcaagtccaatctcgataacattcgccatg
tcgtaccgacctaactaccaaggcggtcgccgaggcgcgtcctccggaagcggtgctggc
agacgcggaggtggcggacgcggtggaggtcgtggcggaggtcgcggcggtgagcagcga
tggtgggaccctgtgtggcgtgccgagcgcttgcgccagcaagcagccaagatggaaatt
cttgacgagaatgaatggtggggtaagatggagcaaatgaaaaacggagaagagcaagag
atgataataaaacataacttcagtcgtgctgatcagcaaaccttgtctgatatggcccat
caattaggtctttactttcatgcatataataaaggaaagacccttgtggttagcaaagtc
cctttgccaatgtatcgggcagatcttgatgaacgtcatggatccacacagaaagagatt
tggatgtctacagaaattgagaggagagttggaaaccttttgaataactcacaggggtca
tcatctgttaataattctggcgtggcacctgaccagggaggcaaacaagtgccacccaat
gtaaaagtagctaatcctgtctctgtggagtatacagatgctaacaaggagaaacttaat
tttgaacttaaggagaggcaggagaaactgatggttggtaacggtgtgaaagccgtgcaa
tcttttcgagaaaagcttcctgcattcaaaatgaaagctgagtttcttaaggctgttgca
gaaaatcaggtattggtagtttctggagagacaggttgtggtaaaacaacacagcttcct
cagtttattttggaggaggagatatcaggtctgcgtggtgctgattgcaacataatttgc
actcaacctcgtcgtatatcttccatatctgttgcagctcgaatatcctcagaaagagga
gagaatcttggtgaaactgttggttatcaaattcgcttggagtcaaagcgttctgatcaa
acaaggctactgttttgcaccactggagtattacttagacaattggttgaggacccagat
attaatcatgtgagccatttactagttgatgaaattcatgaaagaggaatgaatgaagac
tttttgttaataattttgcgcgatcttcttccccggcgtccagatctccgtctcatcctg
atgagtgctaccattaatgctgacttgttctccaaatattttgcagatgccccaactata
cacattccgggattgacctttcctgtggcagatttatttctagaagatgttttgcagaaa
accggttacaacataaagtcagaatatgaaagcttccagggaaactcaagaagaaagagg
agagagcaagattcaaagaaagatcatttaactgctttatttgaggatgttgatattgat
tctacctataaaaattgctgtgcatctactcgagcatctcttgaagcttggtcaggttca
cagcttgatttgggtttggtggagtcaacagtagaatatatctgtcgccatgaaggtgat
ggagcaattcttgtattccttactggttgggatgacatttctaagctaattgacaagatt
aaagtaaacagatttcttggagattcaagcaagtttctagtactccctgtacatggttca
atgccaaccatcaatcaacgtgaaatatttgaccgtcctccgcctaacataagaaaaatt
gttttggcgacaaatattgcagagagtagtatcaccattgatgatgttgtgtatgtcgta
gactgtggaaaggcaaaggaaaccagctatgatgctctaaacaagttggcttgtctgttg
ccatcatggatttcaaaggcttcagcacgacagagaagaggtcgtgctggccgtgtgcaa
cctggcgtttgttataaattgtatcctagaataatccatgattcaatgcttgaatatcag
ctgcctgaaattctccgcatgcctttgcaagagctgtgcttgcatatcaaaagcttgcag
cttggaaccattgggacctttttggcaaaggcacttcagcctccagatactctatctgtt
caaaatgcaattgaacttcttaaaacaattggagctttagatgatatggaagaccttact
ccacttggacgccatctctgcacgctgcctgtggatccaaatattggaaagatgcttcta
atgggagccatctttcaatgcctcaatcccgctttaacaattgcggctgcacttgcacat
cgtgatccatttgtccttcctataaataggaaagaggaagctgatgcagcaaaaagatca
tttgccggtgactcttgcagtgaccacatagcacttctcaaagcgtttgaaggctataag
gatgcgaaacgcaatagaagggaaagagatttttgttgggaaaattatctatctccggcc
accttgcagatgatggaggatatgagaaaccagtttctggatctactatcacacataggc
tttgtggacaaatccaagggtgctaatgcatacaaccagtacagccatgatttggagatg
gtatgtgcaatcttgtgtgctgggctctacccaaatgttgtacaatgcaaaagaagagga
aagcgtacagcattctacacaaaagaagttgggaaagttgacatccatcctgcttctgtt
aatgcagggattcataccttccctctgccttacatggtttacagtgaaaaggtgaagaca
actggtatctttatcagagattcgacaaacatatcagactatgctttgctactatttggt
ggcagtctcattcctggcaaaactggggagggtattgaaatgcttggcggttaccttcat
ttctctgcatcaaagagtgtgttagagttgataaagaaattgcgagcggagctcgacaaa
cttttgaataggaagattgaggaaccagggtttgatctttccgtggagggaaagggagtg
gtttctgctgtggttgagttactgcagagtcaaaatgtacactattaa
DBGET
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