Mangifera indica (mango): 123223233
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Entry
123223233 CDS
T07684
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123223233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123223233
03009 Ribosome biogenesis [BR:
minc03009
]
123223233
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123223233
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 related factors
123223233
Complex B
123223233
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123223233
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
90S particles
Helicases
123223233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ABC_tran
ResIII
SRP54
AAA_30
T2SSE
Flavi_DEAD
AAA_33
AAA_7
PhoH
FtsK_SpoIIIE
TsaE
HTH_IclR
Motif
Other DBs
NCBI-GeneID:
123223233
NCBI-ProteinID:
XP_044502295
LinkDB
All DBs
Position
8:complement(2859568..2863784)
Genome browser
AA seq
724 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSSKSVKSNGTGATMNNNNCSINRWNGKPYSPRYYEILEKR
ATLPVWHQKEEFLQVLKANQVLILVGETGSGKTTQIPQFVLEAVDIETPDRRRKMMVACT
QPRRVAAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDMLVFLTGEEEIEDACRKLSKE
IANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGHPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTELGEKMSEFPLDPQMSRMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCFENFVNHRALKAADNVRQQLVRIMARF
SLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLANFPQCEAKRVLERLYRKWEKER
DNRK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtgagtttgtttgatgtggtagacgagacgtcggtc
tcatcgaagtcagttaaatcaaacggcactggagcgacgatgaacaataacaattgttcg
attaatcgatggaatgggaagccttattcgccgaggtattacgagatactggaaaagcgt
gcaactttgcccgtctggcatcagaaggaggaatttttgcaggtcttgaaagccaaccaa
gttctcatattggtcggtgagactggtagtgggaaaactactcagattcctcagtttgta
ttggaagctgttgatatagaaacccctgataggcgtaggaagatgatggttgcatgcacc
cagcctcgaagagtggctgcaatgtctgtttctcgacgtgttgcagaagaaatggatgta
gctatcggagaagaggttggttatagcatccgttttgaagattgcagtagtgcaagaaca
gttttgaagtatcttacagatggtatgcttttgagagaggcaatgactgatccactttta
gaacgatacaaagtaattatccttgatgaggctcatgaaaggactttggccacagatgtg
ctatttggtcttttaaaagaagtgttgaaaaataggcctgatctgaaactagttgtcatg
agtgcaactcttgaggctgaaaagttccagggttattttaatggtgcaccactcatgaag
gttccaggtaggcttcatccagtggaaattttctatactcaggaacctgaaagggactat
ttggaggcagctattcgaacagttgtgcagatacacatgtgtgaacctccaggggacatg
cttgtttttctaactggagaggaggaaattgaagatgcttgccgcaaattatctaaggag
attgctaatttgggtgaccaagtgggccctgttaaagcagtgcctctgtattctactctt
cctccagctatgcagcagaaaatatttgaacctgctccacctccacttaaagagggaggg
catcctggaagaaagatcgtagtctctacaaacatcgcagaaacttctttgaccattgat
ggaatagtttatgttattgatccagggtttgctaaacaaaaggtttataatccacgagtc
cgtgtggagtctttattggtatctccaatatcaaaagcaagtgcacatcagagatctggc
cgtgcgggaagaactcaaccgggtaaatgttttcgtctctacacagagaaaagttttaat
aatgatcttcagccgcagacttatccggaaatattgcgatcaaacctagcaaatacagtg
cttacattgaagaaactaggcatagatgacctggtacattttgattttatggatccccct
gctcctgagacactgatgcgagcattagaagtgttaaattacttgggagcacttgatgat
gatggaaatttgacagagcttggggaaaagatgagtgagtttccattagatcctcagatg
tcaaggatgcttgttgagagtcctaaatacaattgctctaatgaaattctatcaatttct
gccatgctttcagtacccaattgctttgtccggcctagggaggcccagaaagctgcagat
gaagcaaaagctaggtttgggcatattgatggagatcacctgacgctcttaaacgtatac
cacgcttacaagcaaaacaacgaggatccatcttggtgctttgaaaatttcgtcaatcat
agggcactgaaggctgctgataatgttagacaacagctggttcgcatcatggcaaggttc
agcctcaagttatgcagcactgattttaacagccgggactactatgtcaacatcagaaaa
gctatgctatctggatatttcatgcaagtagctcacttggaacgcactggacattatttg
acagttaaagataaccaagtggtacatttgcatccatcaaattgcctagatcacaagcca
gagtgggtaatttataatgaatatgttcttactagtcggaattttatccgtacagttacc
gatgttcgtggtgaatggctaattgatatagcaccacattattatgatcttgcaaacttt
ccccaatgtgaggccaaacgtgttcttgagaggctttacaggaagtgggagaaggagagg
gacaaccgaaaatga
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