Mangifera indica (mango): 123223529
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Entry
123223529 CDS
T07684
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123223529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123223529
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123223529
mRNA degradation factors
5'-3' decay
Decapping complex
123223529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_TEP1_C
LXG
Motif
Other DBs
NCBI-GeneID:
123223529
NCBI-ProteinID:
XP_044502648
LinkDB
All DBs
Position
1:29245775..29252478
Genome browser
AA seq
1323 aa
AA seq
DB search
MIFRAANEHMASSKTPQPQFDMHSFFPPYYPPSSSSTTTNTTATSSSFFPYPPPFPEPHA
NMQPPRLPPYHTPPPLNAGTQILALLNNNSSTNNANNNGVNNSTNSIIIANNSCQRTAKG
RRVSGDCVAYDVDDRVEGETEPMQLEATPITKYGSDPELVLGRQIAVNAHYIVYGLKGGN
VRVLNLNTASRALFRGHTKRVTDMVFFADHVHLLATVSVEGRVYVWKICEGPDEQDKPQI
TGNVVFATHFLGENKGDYVHPRLCWHCNKQDVLVVGIGKCVLRIDTAKAEKGEGFSTETP
RQCSVDRLFDGIQLVGKHDGEVTDISFCQWTITRLVSASTDGTIKIWEDGKAGPLATLKP
HGGQPVNSAKFLTAPHQAGHIILVTVGPLNKEVKIWSSTSEEGWLLPGDVESWKCTQTLD
FRSSAEAQVEEAFFNQTVALSQAGLLLFANAKKNAIYSVHLDYGANPMATRMDYIAEFTV
TMPILSFTGTTEPPGEHIVKLYLVQTLAIQQYALDLCQCLPPPIESVENTVSGVSHDASN
ADLNGIRVSAFPFPSPASRPIYSEVATARYPLCSTSFEAPALPETMTSNMVSNPISLART
TIDTNVICMASPSLPLSPQLSRKLSGLGNAKNSLDLGPSLGEHGGSQSIIDCSVARQMDT
IHVNVSGAASYNNDAKNEEKKIATKDISRVLNPSILFKHPTHLITPSEILMSSSSSETTN
IIKRHEEEKANIQDVVINRDMVSGEVEVKEVGETRAAHGDEFGSHEETENTEKLFCSQAS
DLGIEMARDSSAILAENHFVEEEPEVDGAGLTAQLSQPSVSGESEAQDSTKDVNGKVSGS
AVTSVFAQSGTLSAKGKNQTGSNAQVPVHSSSVPNSVGSFCEPGGSSTLTSAPADSSQIT
TMQNTLNQLMAVQKELQKQMSSLVTLPVTKEGKRLEASLGRWIEKAVKASTDTLWARFQE
ENGKNEKLSRDRKQQVTLITSIINKDLTPVVEKAVKRELAAVGPAIVRTITPSIEKTISS
TITESFQRGVGDKAVNMLERSVNTRLEATVGRQIQAQFQTSGKIALQDALKSSVEASISP
AFEKSCKAIFEQVDATFQKGMAEHTTAALQHFETAHSPFALALRDSITSASAMTQTLSGE
LTDVQRKLISLAAAGGNPTVVNPLIPQLSNGPLHVLHDKVESSLNPAKELSRLVSEQKYE
EAFTVALQRSDVSIVSWLCSQVDLHGILATMPLPLSQGVLLSLLQQLACDINKDRHRKLA
WITDVAAAINPTDPLITMHAQPIFDQVYQRLHLQRSSPTTTGAELSSIRLIMHVINSMMM
TCK
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcgcgcagcaaatgaacatatggcatcttctaaaacccctcaacctcaattt
gacatgcacagtttcttccctccttattatccgccgtcctcctcctccaccaccaccaac
accactgcaacctcctcttccttcttcccttaccctccgccattccccgagccccacgct
aacatgcaaccccccaggttgcccccttatcatacaccccctcctctcaacgccggcacc
caaattctcgctcttctcaacaacaacagcagcaccaacaacgctaacaataatggcgtt
aataattctactaatagtattattattgctaataattcttgtcagagaacggccaaaggg
cgacgtgtttcaggtgattgcgtggcgtatgacgtagacgatcgtgttgaaggcgaaaca
gaaccgatgcaactggaggcgactccgattactaagtacgggtcggatcctgagcttgtt
ctcggcagacaaatcgctgttaatgcacattacattgtgtacggacttaaaggtggaaat
gttagggttttgaatctcaacaccgcttcgcgcgctttgtttcgtggccacactaagaga
gtcacggatatggtgttttttgcggatcatgtgcaccttttggctactgtgagcgtggag
gggcgagtttatgtttggaagatatgtgaaggtccagatgagcaagataagccacaaatt
actggcaatgttgtttttgctactcattttttaggagagaataaaggagattatgtgcat
cccaggctttgttggcattgtaacaaacaagatgttttggtggtgggaattgggaagtgt
gtgttgagaattgatactgcaaaagctgagaagggtgaaggtttttcaactgagacacct
cgtcagtgttctgttgacagactctttgatggaattcagttggttggtaaacatgatgga
gaagtaactgatatatctttttgtcagtggacaatcacccgtttggtttctgcttctacc
gatggcacgataaagatttgggaagatggcaaggcagggccccttgctacattgaaacct
cacggtggccaacctgtaaattcagccaagttcttgactgctccacaccaggcgggtcac
atcatacttgtcacagtgggacctttaaataaggaagtgaagatttggtcatcaactagt
gaagaaggatggctgcttcctggtgatgttgaatcatggaagtgtacgcagacattagac
ttcaggagttctgctgaagctcaggttgaggaggcattctttaaccaaactgtggcattg
tctcaagctggtcttctcttatttgcaaatgcgaagaagaatgcaatttactcagtacac
ttggactatggagctaatcccatggccacccgcatggattacatagcagagtttactgta
accatgcctattttgagtttcactggaacaactgagcctcctggtgaacacatagttaag
ctttatttagtccaaacattggctattcagcagtatgctttggacttgtgccagtgcttg
ccaccaccaatagaaagtgtggagaatacagtttcaggtgtctcacatgatgcaagtaat
gctgacttaaatggaattagagttagcgcatttccattccctagtccagcatccaggcca
atttactctgaagttgctactgcaagatatcctctatgttctacttcttttgaggctcct
gctttgccagaaactatgacgtctaacatggtttctaatccaatttctctggcacgaaca
actattgatactaatgtaatttgtatggcatcaccttctcttccactgagtcctcagttg
tctaggaagctttccggtcttggaaatgcaaaaaatagccttgatctgggcccctcgctt
ggtgaacatggcggaagccaatccattattgactgttcagttgccaggcaaatggacacc
attcatgtaaatgtatctggtgcagcttcctataataatgatgcaaagaatgaagaaaag
aaaattgcaacaaaagatatatccagggtgcttaatccatctatcctgttcaaacatcct
actcatttgataactccttctgagatcttaatgtcaagttcatcttctgaaactactaat
attattaagcgccatgaggaggaaaaggcaaatattcaagatgtggtcatcaatagggat
atggtaagtggtgaggtggaggttaaagaagtgggtgaaacaagggctgctcatggtgat
gaatttggttcccatgaagaaacagaaaacacagaaaagctgttctgctcccaggcttca
gatcttggaattgagatggccagagattcatctgcaatattggcagaaaatcattttgtg
gaagaagagccggaagttgatggtgctggcttaacagcccaactttcccaaccttctgtt
agtggtgagtcagaagcccaggactctacaaaagatgttaatggaaaggtttcagggtca
gctgtgacatcagtatttgcacaatctggaacactgagtgccaaggggaaaaaccagaca
ggaagcaatgctcaagtgccagttcattcttcaagtgttcccaactcagttggttctttc
tgtgaacctggtgggagttcaactctcacctctgcacccgctgattcgtctcaaatcaca
acaatgcaaaatacacttaatcagctaatggccgtgcaaaaggaactgcagaagcagatg
tcaagcttggtgacccttcctgtaacaaaagaaggtaaaagactggaggcatctctagga
aggtggattgagaaggctgtcaaggccagtactgatacattgtgggctcgtttccaagag
gagaacggaaaaaatgagaaattatcccgagaccgcaaacagcaagtaactttgatcact
agcattattaacaaggacttgacccctgtagtagaaaaagcagtgaagagggaattggct
gcagttggaccagctattgtccgcaccatcactcccagcattgagaaaaccatttcgtca
actattacagagtccttccagagaggagtcggtgacaaggcagtgaatatgctggagagg
tcagttaatacaaggcttgaagccactgttggtaggcaaatccaagcacaatttcaaact
tctggcaagatagctctccaggatgctttgaagtccagtgtagaagcttcaatttcccct
gcctttgaaaagtcatgcaaagctatttttgagcaagtggatgctacctttcagaaagga
atggctgaacatacaaccgcagctctgcagcattttgaaactgcacattctccctttgct
ctagctttaagggattcaattacttctgcttcagcaatgacccaaactttaagtggagaa
ttgacagatgttcagcgtaaacttattagtctcgccgctgcaggaggaaatccaactgtt
gtaaatcccttgattccccaactgagcaatggacctttgcatgttctccatgataaggtt
gaatcatctttaaaccctgcaaaagagctatccagattggtatctgagcagaaatatgaa
gaagctttcactgttgccctacaaagaagtgatgtgtctattgtgtcttggttatgttca
caggttgatctacacgggattctggctacaatgcccctccctttgagccaaggagtattg
ctctctcttctgcagcagttggcctgtgacatcaacaaggacagacatcgtaaacttgca
tggattacggatgtggctgctgccataaacccaacagatccattgatcacaatgcatgca
caacccatctttgatcaagtctatcagagactgcatcttcaacgcagctcaccaacaact
accggagctgaactttcaagtatccgtcttatcatgcatgtcatcaactccatgatgatg
acctgtaaatga
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