Mangifera indica (mango): 123223744
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Entry
123223744 CDS
T07684
Name
(RefSeq) protein CHROMATIN REMODELING 8-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
minc
Mangifera indica (mango)
Pathway
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
123223744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
minc03036
]
123223744
03400 DNA repair and recombination proteins [BR:
minc03400
]
123223744
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
123223744
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
123223744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
123223744
NCBI-ProteinID:
XP_044503021
LinkDB
All DBs
Position
8:5816748..5822905
Genome browser
AA seq
1231 aa
AA seq
DB search
MEEEEDRILLSSLGVTSANAEDIERDVIAAAVENDAGNNNKVDGSNEEKCCVKLESVDLS
STSQEKLYNKLRAVEFEINAVSSTVGLVRKVADEGDHATNVDGGTERGNKEGDKSVVQAS
VNGSSLQHALATDRLESLKERKAQLEKELSLFRNEKTSKGIKHDKLIQDLVKEEFRSKKK
EKETQKAGRKQSKWQKTVSFIDDADFDSVLDAASAGFVETKRDELVRKGILTPFHKLKGF
ERCLQQPGPSNEQNITMAEDKRSDLFSASVDRAIRSISEAAQTRATTKLLDPDEIPKLDR
PTHPFQRLKTPFNISLSSPTGAEKKKGTKRKKKRPLPNKTWRKRISLEETGVGANDGRDN
LDTSSCEGEKQEDAEDTDDSESGFVTLEGGLKIPESIFSNLFDYQKVGVQWLWELHCQRA
GGIIGDEMGLGKTVQVLSFLGALHFSSMYKPSIVVCPVTLLRQWKREAQKWYPNFHVEIL
HDSAQDPCRKKTGGKCSDSDYDSDSTLDSDYEEKMSYKNTKKWDSLINRVLKSESGLLIT
TYEQLRLLGEKLLDIDWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLS
ELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVILRDLILPYLL
RRMKADVNAQLPKKTEHVLFCSLTAEQRSVYRAFLASTEVEQILDGRKNSLYGIDVMRKI
CNHPDLLEREQSCQNPDYGNPERSGKLKVVAQVLKVWKEQSHRVLLFSQTQQMLDILESF
LINNGYDYRRMDGLTPVKQRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGANRVIIFDP
DWNPSTDIQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR
FFKARDMKDLFTLNDDGDGGSTETSNIFSQLSEDVNLVGAEKEKKLDKQKFKNAAATNAY
DTTDDKENSLETGSFKREGKEKADNNNGEVNEETNILKSLFDAQGIHSAVNHDVIMNAHD
EEKLRLQEQALQVAQRAAEALRQSRMLRSHDDISVPTWTGKSGTAGAPSSVQQKFGSTVN
SQLIKPSDDSSSSKTNKFSGFAAGASAGKALSSSELLAKIQGNQEKAVGAGLRHKVASSS
ANGTRSTDVGTSRSSHNLSGVQPEVLIRQICTFIQEEGGSTDSASIVQHFRDRIPRKDLP
LFKNLLKEIAILKKDPDGSFWVLKPEFQKQK
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaggacaggattttgctgagtagtttgggtgtgacatcggcaaacgct
gaagacatcgaacgtgatgtaatagctgccgcggtggaaaatgatgctggaaacaataat
aaagttgatgggagcaatgaggagaaatgttgtgttaaactggaaagtgttgatctttcc
tccaccagtcaagagaaactttacaataaattaagggctgtagaatttgaaataaatgca
gtttcttcgactgttggtcttgtgagaaaggttgctgatgaaggagaccacgctaccaat
gttgatggtggcacagaaagagggaataaagagggtgataaaagtgttgtccaggcatct
gtcaatggttcaagtcttcagcatgccctagctaccgatcgactagaaagcctcaaggag
aggaaggctcaacttgagaaggaactttcactttttagaaacgaaaaaacttccaagggt
attaagcacgataaacttattcaagatctggtaaaggaagaattcagatccaagaaaaag
gaaaaagaaactcagaaagcaggcagaaaacagtcaaaatggcagaaaacagtttcattc
attgatgatgctgattttgattctgtattagatgcagcatctgcaggatttgttgaaaca
aaaagggatgaattggttcgcaaaggaattttaactccttttcacaagcttaagggcttt
gaacgttgtcttcaacaacctggaccatctaatgagcagaatataaccatggcagaagac
aaacgcagtgatcttttctcagctagtgttgatagagctattcggtcaatttcagaagct
gcacaaactcgtgcaacaaccaagttgcttgatccagatgaaattccgaagcttgataga
ccaacacatcctttccagaggctaaaaacaccttttaatatctccctctcttcaccaact
ggggctgaaaagaaaaaaggtacaaaaaggaaaaagaagcgacctttgcctaacaagacg
tggaggaagcgcatttctcttgaagaaaccggtgttggagctaatgatggaagggataac
ctggatacttccagttgtgagggagaaaagcaagaggatgcggaagatacagatgacagt
gaatctggttttgtgacacttgaaggtggactcaaaattccagaatccatttttagtaat
ctttttgattatcaaaaggtgggagtgcagtggctatgggaattgcattgccagagagca
ggtggaattattggagatgaaatgggtcttggcaagactgtccaagtgttatcctttctg
ggggcattgcatttcagtagtatgtacaaaccaagcattgttgtctgcccagttacactg
ttgcgacagtggaaaagggaagctcaaaaatggtatcctaacttccatgtggagattttg
catgattctgctcaggatccttgtaggaaaaagacgggaggtaaatgttctgatagtgat
tatgatagtgacagtacattggacagtgattatgaagaaaaaatgtcttataaaaacacc
aaaaaatgggattccttgataaatcgagttctaaaatcagaatctgggttgcttattacc
acttatgagcaactacgcttactgggggaaaagttgcttgatatcgactggggttatgcc
gttctggatgaaggacatagaattcgaaatcctaatgctgaaatcactctagtttgcaaa
caactacagacagttcaccggataataatgactggtgcaccgattcaaaataaactttca
gaattgtggtccttgtttgattttgttttccctggaaagttgggggttttgcctgttttt
gaggcagaatttgcagttccaatagctgtaggtggttatgccaatgcttcacctttacaa
gtatcaacagcctacagatgtgctgtgatccttcgagacttgatcctgccttatcttctc
cggcgtatgaaagctgatgtgaatgcccagcttcccaaaaaaactgagcatgttctcttc
tgcagcctcactgcagagcaacggtctgtatatcgagcctttcttgccagcactgaggtg
gaacaaatattggatgggagaaaaaattctttatatggaatcgatgtgatgcgcaagata
tgcaaccatccggatctgcttgagagagagcaatcctgccagaacccagattatgggaat
cctgaaagaagtgggaaattgaaagttgttgcccaagtgctgaaggtttggaaggagcag
agtcatcgtgtgcttcttttttctcaaactcaacagatgcttgatattcttgagagtttc
ttgattaataatggttatgactataggagaatggatggtctcactcctgtcaagcagagg
atggccttaatagatgagttcaataactccaatgatgtgtttatattcattttaactaca
aaagttggtggtttgggaacaaatttgaccggtgcaaacagggtgatcatctttgaccct
gactggaacccatcaactgacatacaggccagggagcgtgcttggcgaattggtcagaaa
caagatgttactgtttatagattgataacgcgtggaacaattgaggagaaggtgtatcac
cgtcagatatacaagcattttcttactaataagatattgaagaacccacagcagagaagg
tttttcaaggctcgagatatgaaggatcttttcactttaaatgatgatggggatggtggg
tcaaccgaaacttctaatattttcagtcagttgtctgaagatgtgaatcttgttggggct
gagaaagaaaagaagctggataagcagaaatttaaaaatgctgctgcaacaaatgcatat
gacactacagatgataaagaaaacagcttagagactggatctttcaaaagagaagggaaa
gaaaaagccgataataataatggtgaagtaaatgaagaaacaaatatcttaaagagtctt
tttgatgcacaaggcatacatagtgctgtgaaccatgatgtaatcatgaatgcccatgat
gaagagaagctgaggctgcaggagcaagcattgcaagttgcacaaagagcagctgaagct
ctgcgccagtccagaatgcttcgaagtcatgatgacatatctgtcccaacatggacaggg
aaatctggaactgctggtgcaccatcatctgttcagcagaaatttggttcaactgtgaac
tctcagttgattaaaccttcagatgactcatccagcagcaaaacaaacaagttcagtggc
tttgcagctggggcatctgcaggaaaggcattatcctcatctgaattactggctaaaatt
caaggaaaccaagaaaaggcagttggtgctggacttaggcataaggtggcctcaagttct
gccaatggaacaagatctacagatgtgggaacctcacggtcatctcacaatttatccggt
gtgcagcctgaagtattgattcgtcaaatatgtactttcatacaagaagaaggtggaagc
actgattcagccagcatagtccagcactttcgtgataggattcctcgaaaggatcttcct
ttatttaaaaatcttttgaaggaaattgctatccttaagaaggacccagatggatcattt
tgggtgctgaagcctgagtttcaaaagcagaaatga
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