Mangifera indica (mango): 123224504
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Entry
123224504 CDS
T07684
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123224504
03015 mRNA surveillance pathway
123224504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123224504
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123224504
5.6.2.5 RNA 5'-3' helicase
123224504
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123224504
mRNA cycle factors
Common to processing body (P body) and stress granule
123224504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
123224504
NCBI-ProteinID:
XP_044504124
LinkDB
All DBs
Position
8:3955582..3968817
Genome browser
AA seq
1292 aa
AA seq
DB search
MDSQQNNLFETASQPDTGTDAYTFLEFNTQGESDFDAYPEFRSPVSWPTPSDSLAVDTAS
TPTPTTPTTPSDSRGAPPSSDHLHHHHHHHNHHRHTDSLAATSSPSKRGANNSSNNNHST
NTSSSQIVEGLAALSFEETGDDGEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTES
VVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQIN
KVEELWKTNPDATLEDLEKPGVEDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKES
QSKDNVTIRWDVGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIK
LTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQVAMKTFAVDETSVSGYIYHH
LLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA
IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQ
VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGD
PRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVP
NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY
IVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYND
RRLYFAGGPGIVSNDISSSSSNADRRGGRGRGSYIPPGPPNGTHKPGVHPAGFPMPRVPL
PPFQGGPPSQPYAIPTRGSVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLQHQQATQ
QTMGTIGSTFNFPSLENPNSQPSVGGPLTQPGFVNNMPVEGASQSFRDGFSMGGMSQDFL
GDDFKSQGSHVPYNVADFSTQQASQSGYTVDYVTQGAQSGFPGNFLNQNSQAGYSRFGSG
NDFMSQDYLAQGSQGLFTQVGFNDPTQDDALQTQSHFSVTNPNQLQSQGLMNSLYSQPFA
HYNTQPINMQASSQQQPQPGQGSQKQKVHYTG
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagcaaaacaatctattcgaaacggcatcgcagccggatacggggacggac
gcctacaccttcctcgagttcaacacacaaggcgagtccgatttcgacgcctatccggaa
tttcgttcgcctgtatcctggcccacgccttccgattctctcgcggtggataccgcttcc
acgccaactcctactaccccaacgaccccctccgattcacgtggtgcacctccatcatcc
gatcacctccaccaccaccaccaccaccacaatcaccatcgacacaccgattctcttgct
gccacgtcatcgccttctaaaagaggagccaataatagcagtaataacaatcatagcact
aataccagtagtagtcagattgtggaggggcttgcggccttgagtttcgaggagacgggt
gatgatggagaggggttcgagtatggaaaagcagatttcacggagcacgcttgtcggtac
tgtggggtctcgaacccggcgtgtgttgtacggtgcaatgttccctcgtgtcgtaagtgg
ttctgcaattcaaggggtaacacctccggctcacacattgtcaatcatctggttcgagca
aaacacaaggaagtgtgtcttcataaagacagtcctttgggagagactatccttgaatgc
tacaactgtggatgcagaaatgtattccttcttggctttatatcagctaagacagagagt
gtcgttgttcttctctgtagggaaccttgcttgaatgtaaatgcattgaaggacatgaat
tgggacttgagtcagtggtgccccctgattgatgataggtgtttcttgcaatggcttgtt
aaggttccatctgagcaagaacagttaagggcacgacagatcagtgctcaacaaattaac
aaagtagaagaactttggaagacaaatcctgatgctacgcttgaagatctggagaagcct
ggtgtggaagacgaacctcaacctgtggccttgaagtatgaagatgcatatcagtatcaa
aatgtatttgcaccacttatcaagcttgaagctgactatgataaaatgatgaaagaatcc
caaagcaaggacaatgtcacgattcgatgggatgtcggtcttaacaagaaacgtattgca
tattttgtatttccaaaggaagacaatgaattacgattagtacctggggatgagttgcgg
ttgcgttattctggggatgcagctcatccagcatggcagtcagttgggcatgtgatcaag
ctaactgcacaagaggaagttgcacttgagcttcgtgctagtcagggggttcctgttgat
ataaatcatggattcagtgttgattttgtgtggaagagcactagctttgataggatgcag
gtggcaatgaaaacttttgcagttgatgaaacaagtgtcagtgggtatatttatcaccac
ttgttgggccatgaagttgaggttcagatggttcgcaatacactgcctcgtcgttttggt
gcacctggtcttccagagctgaatgcatcacaagtatttgctgtcaagagtgtccttcag
aggcctataagtttaatacaaggtccacctggcacagggaaaactgtcacttctgcagct
attgtttaccacatggccaaacagggccaagggcaggttttagtctgtgcaccaagcaat
gttgctgttgaccagctagctgaaaagataagtgccactgggttaaaggttgttagactt
tgtgccaaatcgagggaagccgtgagctctccagtcgagcatttaacccttcattatcag
gtccgacatcttgacacatctgagaagagtgaacttcacaagttacaacaattgaaagat
gaacaaggcgagttgtcgagcagtgatgagaaaaaatacaaagcacttaagcgggcaaca
gagagggaaatttcacagagtgctgatgtcatttgttgcacttgtgttggtgctggagat
cctcgattggcaaattttaggtttcgccaggtacttattgatgagtctactcaggcaaca
gaacctgagtgtcttattcctttggttcttggggcaaaacaggttattcttgttggtgat
cattgccaacttggtccagttattatgtgcaagaaagcagctcgtgctgggcttgcccag
tcactttttgaacgccttgttttacttggtttgaaaccaattagattgcaggttcaatac
cgcatgcatccatccctgtctgaatttccttctaacagcttctatgaaggcacactacaa
aatggtgtgactatcaatgagaggcaatcatcaggaattgattttccatggcctgtgcca
aatcgtcccatgttcttttatgtacagatgggacaagaggagatcagtgccagtggaaca
tcctatctaaatcgtactgaggctgcaaacgttgagaaaattgtaactactttcctaagg
agtggggtggtccctagccagattggggtgatcacaccatatgagggacagagagcatat
attgtgaactatatgtcaaggaatggtgctctaaggcagcaactgtacaaggaaattgag
gtagcaagtgttgattcgtttcaagggagggagaaagattacataattttgtcttgtgtg
aggagtaatgaacatcagggtattggattccttaatgatcctcgtaggctgaatgttgct
ctaacacgtgctcgatatggtattgttattctgggaaaccctaaagttctgagcaaacaa
ccactttggaatggtttattgacacactacaaggagcatgagtgcttggtcgagggtcct
ctaaataacttaaagcaaagtatggtccaatttcagaaacccaaaaagatttacaatgat
cgaagactatactttgctggtgggccgggaattgtgtctaatgatatctcatcatctagt
tcaaatgctgatcgaagaggtggtcgcggtagggggtcatacatacctcctggtccaccc
aatggtactcataaacctggagtgcatcctgcaggtttccctatgcctcgtgtgcccctt
ccaccgtttcagggtggccccccttctcagccatatgctattccaactcgtggttctgta
catggaccagttggagctgttcctcatgttcctcaaccaggtagtcggggttttggagcg
gggcgtggtaatgctggtgccccaattggcagtcatcttcagcatcagcaagcgactcag
caaacaatgggaacgattgggtctactttcaactttccatctcttgagaatccaaatagc
caaccatctgtgggtggtcctttgacacagcctggatttgttaataatatgccagttgaa
ggggctagtcaatcttttcgggatggattttccatgggaggcatgtctcaggatttcttg
ggtgatgacttcaaaagccagggatcacatgttccttataatgttgctgacttctctact
cagcaggcctcacaaagtggctatactgttgactatgttacacaaggagcacagagtgga
tttcctggcaacttcttaaaccagaattctcaagctggatattctcgttttggttccgga
aatgatttcatgtctcaggactacttggcacagggatcacaaggtttatttactcaagtt
ggctttaatgaccccacacaagatgatgcattgcagacacagagccattttagtgtaact
aatcccaatcaacttcagtctcagggattgatgaattctctctattcccagccctttgcc
cactacaacactcaaccaattaatatgcaggcttcttcacagcagcagcctcaaccgggc
cagggctcacaaaagcagaaagtgcactatactggttga
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