Mangifera indica (mango): 123225569
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Entry
123225569 CDS
T07684
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123225569
09122 Translation
03013 Nucleocytoplasmic transport
123225569
03015 mRNA surveillance pathway
123225569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123225569
03041 Spliceosome [BR:
minc03041
]
123225569
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123225569
TREX complex
123225569
Spliceosome [BR:
minc03041
]
Complex C
Other components
EJC/TREX
123225569
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123225569
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_11
Motif
Other DBs
NCBI-GeneID:
123225569
NCBI-ProteinID:
XP_044505556
LinkDB
All DBs
Position
9:complement(16093252..16098265)
Genome browser
AA seq
279 aa
AA seq
DB search
MATNVDMSLDDIIKSRKKNERVRGQGGALRGRGRGRGRGRGVPGSSFNNGGGRMLGPVRR
GPLTVKARPSSYTIAKSFRRTKNFPWQHDLFEDSLRAAGISGIEVGAKLYISNLHVGVTN
EDIRELFSEIGELKRYAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKLMKIE
IVGPNAEVPISARVNVSGVNGRRKRTVVMTPASGRPGPSAAINRGSGQNRRGGLRNNRGG
GRGGGRGRGIVQGKKKPVDKSADELDKELDKYHAEAMQT
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaatgtggatatgtctcttgatgacataataaagagcaggaaaaagaatgag
agagttagaggacaaggtggggcccttcgtgggcgtggccgcggccgcggtcgtggccgt
ggtgtcccgggcagttcttttaataatggtggtggaagaatgctggggcctgttcgtaga
ggtcctctcacagtgaaagctcgaccatcatcatataccattgccaagtcttttcgcaga
accaagaattttccctggcaacatgatttgtttgaagacagccttagagctgcaggaata
tctggaatagaagttggcgcaaagttatatatttcaaacttgcatgttggagtaaccaat
gaagatataagggaacttttctctgagattggagaactgaagcgatatgccattcattat
gacaaaaatggtcgtcccagtggatcagctgaagttgtgtataccagaagaagtgatgca
tttgcagcacttaagcggtataacaatgtattgcttgatggaaagctcatgaagattgaa
attgtgggccccaatgcggaagtgcctatctcagctcgtgtgaatgtaagcggggtgaat
ggaaggcggaagaggacagtggttatgacgccagcatcaggtcgaccagggccctcagct
gcgataaaccgtggttctggtcagaaccgtcgtggaggtcttaggaataaccgtggaggt
ggacgtggtggtggtcgtggacgcggtattgtccaggggaagaagaagcctgttgataag
tcagctgatgaactggacaaagaactggacaaatatcatgctgaagcgatgcagacttag
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