Mangifera indica (mango): 123225626
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Entry
123225626 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
minc
Mangifera indica (mango)
Pathway
minc03030
DNA replication
minc03410
Base excision repair
minc03420
Nucleotide excision repair
minc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123225626
03410 Base excision repair
123225626
03420 Nucleotide excision repair
123225626
03430 Mismatch repair
123225626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
minc03032
]
123225626
03400 DNA repair and recombination proteins [BR:
minc03400
]
123225626
DNA replication proteins [BR:
minc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123225626
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123225626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
RCF1-5-like_lid
AAA_30
AAA_19
PTCB-BRCT
Rad17
BRCT_2
AAA_5
nSTAND3
AAA_assoc_2
Sigma54_activ_2
RuvB_N
Zeta_toxin
AAA_14
Gp44_lid
AAA_18
AAA_17
RsgA_GTPase
AAA_16
AAA_28
TsaE
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
123225626
NCBI-ProteinID:
XP_044505658
LinkDB
All DBs
Position
9:complement(14557907..14570653)
Genome browser
AA seq
969 aa
AA seq
DB search
MPQDIRKWFLKPHDKDKGKDNSSSLISANSAMSNLEPIQLCGGKEGSGRRKTSKYFAADK
QKLDDEKGKEELPAKRKTQNDIDDSLKSPQSKKIQKVDDNDDDFVLSNEKRNSIGVNPSK
KLKSGSGRGVAPKSAQADDSVDDNVKDSESPLKSSGRGCGARASETPASGRGRGGGRGRF
MNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEALIKRHGGRVTGSVS
KKTSYLLCDEDIAGVKSSKAKELGTAFLTEDGLFDMIRTSNLAKACGQDDSKKSMEKAAT
SLPVKRSPKKVEVKSNSSATKVARESTISRASPVKKKEQNIQDSSLTWTEKHRPKVPSDI
VGNQSLVNQLHNWLAHWNEQFLGSGTKKNGKKKIDPNSKKAVLLSGAPGMGKTTSAKLVS
QMLGFQAIEVNASDSRGKADSKISKGIGGSNANSVKELVSNEALNVKMDRSKHPKAVLIM
DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQI
AKRLMQIANAEGLQVNEIALEELAERVNGDIRMAINQLQYMSLSMSNIKYDDIRQRLLTS
AKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDLDLVPLLIQENYINYRPNLAGKDEM
KRMSLIARAAESIGDGDIVNVQIRRYRQWQLSQTGCLASCIIPAALLHGQRETLEQGERN
FNRFGGWLGKNSTMGKNLRLLEDLHVHLLASRESNLGRETLRLEYLTLLLKQLTDPLREM
PKDEAVRKVVDFMNIYSISQEDFDTIVELSKFQGHGNPLEGIPPVVKSALTRAYNEESKL
RMVRAADLVSLPGKKKTPKKRIAKILEPSDEGIGEENAAILDNSEEENSSDTEDPDTVNG
EKVQKELQSLNSKGIEVQVELKGSESSSAKKKAAGRGKGGSASSEKKDNSGSAAKKAGRG
SGGAAKRKR
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagatattaggaagtggtttcttaaaccacatgacaaagacaaaggcaaagac
aatagcagtagcttgatctctgcaaattctgcaatgagcaatttggagccaatccagttg
tgtggaggcaaagagggttcaggtagaaggaaaactagcaagtattttgctgctgataaa
caaaagctagatgatgaaaaaggaaaagaggaacttccagctaagaggaaaacacaaaat
gatattgatgattcccttaaatctccacaatcaaagaaaattcagaaagttgatgacaat
gacgatgactttgtcttgtctaatgagaagaggaactctattggtgtcaatcccagcaag
aaattgaagtctggttcaggtagaggagttgcaccgaaatctgcacaagctgatgacagt
gttgatgataatgttaaagattcagagtctcctcttaagtctagtggaaggggttgtggt
gctagagcatcggagacaccggctagtggaagaggcaggggtggtggacgaggtagattt
atgaatttcggggaaaggaaagatcctccacacaaaggggaaaaggaagtccctgaaggt
gctcctgattgcttagctggtttgacttttgtaattagtggaacgcttgacagtttggaa
agggaagaggctgaagctttgattaaacgccatgggggtcgtgttactggatcagttagc
aagaaaacgagttatcttttatgcgatgaagatattgcgggagtgaaatcatctaaagcc
aaagaacttggcactgctttccttacggaggacggattgtttgatatgatccgcacatca
aatctggcaaaagcatgtggacaagatgattcaaagaaatcgatggagaaagctgctaca
tctctgcctgtcaagcgaagtcccaaaaaagtcgaagttaaaagcaactcctcggcaaca
aaagtagcccgtgaaagtacaatctcacgtgcttctcctgtaaagaaaaaagaacaaaat
atccaggattcttcattgacatggacagaaaagcataggccaaaggttccaagtgacatt
gtcgggaatcagtcactggttaaccagcttcataattggttagcacattggaatgagcaa
tttcttggtagtggaactaagaaaaatggaaaaaagaaaattgatcccaactccaaaaag
gccgtgcttttaagtggagcacctggtatgggaaaaactacatcagcaaagttggtttct
cagatgctgggtttccaggcaattgaggttaatgctagtgatagccgtggtaaggctgat
tccaaaatttcaaagggaattggtggaagcaatgcaaattctgttaaggaacttgtcagc
aatgaggccttgaatgttaaaatggatcgttccaagcatcccaaagccgtgctgattatg
gatgaggtagacggaatgtcagctggagatagaggaggagtcgctgatcttattgctagc
ataaagatctccaaaattcctattatctgtatatgtaatgaccgctacagtcagaaactg
aaaagtcttgtaaattattgcttgcttctcagttttcggaaacctacgaaacaacagatt
gctaagaggttaatgcaaattgcgaatgctgaaggtcttcaggttaatgagattgctctt
gaggagctagcagagagagtgaatggagatattcgaatggccataaatcagctgcagtat
atgagtctctccatgtcaaacatcaagtatgatgacatacgacagcgccttcttactagt
gccaaggatgaagatatttcaccgttcacagctgttgacaagctgtttggctttaatggg
ggaaggttgagaatggatgagcgaattgacctgagcatgagtgatctagacctagtccct
ctacttattcaggaaaattatattaattataggccaaatttggctggtaaagatgaaatg
aagcgaatgagcttgattgcccgtgctgctgagtctattggcgatggggatatagttaat
gtgcagattcgaagatatcgacagtggcagctctctcaaactggttgtcttgcgtcctgt
atcattcctgctgctttgttgcatggacagagggagacacttgaacagggagaaaggaat
tttaacagatttggtgggtggctgggaaagaattcaacaatgggcaaaaatttaaggctt
ttggaagatttgcatgttcatcttcttgcttctcgtgaatctaatttgggaagggagaca
cttcgacttgaatatcttactctccttttgaaacaattaactgatccactgcgtgagatg
cctaaggatgaagctgttaggaaggttgtggattttatgaatatttactcaataagccag
gaggactttgatactattgtggagctgtcaaaatttcaggggcatggaaatccgctagaa
ggcattccaccagttgtcaaatctgctttgactagagcgtataatgaagaaagcaaattg
cggatggtaagagctgcagatttggtctcacttcctggaaagaagaagacacctaagaag
cggattgctaagattctggaaccgtctgatgaaggaattggagaggagaacgctgccata
ttggacaatagtgaagaagaaaattcttcagacacagaagacccagacacagtaaatggt
gagaaggtgcagaaggaactgcaaagtctgaattcaaaaggaattgaagtacaagtggaa
ttaaagggaagtgagagttcaagtgccaagaagaaggcagcaggcagagggaagggtggc
tctgcatcctccgagaagaaagataattctggatccgccgcgaagaaagccgggcgtggc
tcagggggtgcagccaagagaaagagatga
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