Mangifera indica (mango): 123225890
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Entry
123225890 CDS
T07684
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
minc04131
]
123225890
Membrane trafficking [BR:
minc04131
]
Protein recycling
Others
EARP complex
123225890
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DUF6761
Motif
Other DBs
NCBI-GeneID:
123225890
NCBI-ProteinID:
XP_044506151
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Position
9:complement(14088950..14108663)
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AA seq
1129 aa
AA seq
DB search
MQPNLFPFGTISGNPFIFNEELREGGGFQSSSIFFLVPFLLFQGGGMDLSKVGEKILSSV
RSARSIGLLPSSSDRPEVPARAAAAAVVARALAGLPAHQRLSLPSSSEELRFIYGSSSQA
EVVEELEEEFYKEDFDPINHMLEHIPSEENELEYFEKQASLRIAQLDRVAELLSRNVMEH
HEVMVKGMNLVRELEKDLQVANVICMNGRRHINSSITEVSRDLIVNANSKKKQTLLDMIP
ILTELCHARDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSELSAIQEMSRGVEVWLSR
TLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHYVLKSI
VVEDHDLDMQNSRLTYSDLCLRIPESKFRLCLLKTLGVLFKLMCSYHEIMSFQPEIENSL
SQTLKMKKDSDISRSSVEVQHNDSLTRNSCNSMGVNGSLSESVDKMSGLSSAEESTTTIS
SAEPSGTSSTCIKSHDFVEEARDDGSAASSSGSPWYQLRKDATSFVSQTLLRGRKNLWQL
TTSRVSVLLSSAAVCSTSIHQFLKNYEDLSVFILAGEAFCGIEAVEFRHKLKAVCENYFV
AFHRQSIFALKMVLEKEHWMKLPPDTIEVVNFAGLVGDGAALIASSNSSNARVLHSDKVA
NSIGSSAKKSGFSNWLKSGNPFLIKLKYTSKEGNVNSPQLNGAIAGEYDGSINDYFHSDK
GTPKGSDSSHMNGINTITEDENEDLLADFIDEDSQLPSRISKSNNRRNHSSNSNNDETSA
QTGSSLCLLRSMDKYARLMQKLEIVNVEFFKGMCQLFEVFFHYVFETFGQQCNNSNAKGS
NNPLNYRLKTALTRIAQDCDEWLKPHLTSYLPASPAPLTHVDVTPTSPPSQPPGTSFGLK
ERCTGADTISLVAQILYRSRTHLQSMLLQSNAVEDFYVHLVDSVPDLTEHIHRTSARLLL
HIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGVCKEVQERLLEYGVD
IVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVSINVKPKLQIVETFIKAYYLP
ETEYVHWAAAHPEYSKSQIVGLINLVASMKGWKRKTRLETLEKIESAVV
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaatctgttccctttcggcaccatatcggggaatccttttatattcaatgaa
gaattgagggagggaggaggtttccagagctctagcatcttcttcttagttcctttcttg
ttattccaaggaggcggaatggatttgtccaaggtcggtgagaagattcttagctccgta
cgttccgctagatccattggacttttgccttcctcttctgatcgtccggaggttccagct
cgggctgcggcagctgcagttgttgctcgtgctcttgcaggactgcctgctcatcaaagg
ctgagtcttccatcgagctctgaagaattgcgttttatatatggaagtagttctcaagct
gaggttgtggaggaactagaagaagagttctacaaagaggattttgatccaataaatcat
atgttggaacatattccatctgaagaaaacgagcttgaatattttgagaaacaggccagt
cttcgaatagcacaactggatagagtggctgagcttttatctcgcaatgtcatggagcat
catgaagttatggtgaaggggatgaatttagtcagggaattggagaaagacttgcaggtt
gctaatgttatatgtatgaatggaagacgccatataaactcatcgatcactgaagtttca
agggatctcattgtaaatgccaattcaaaaaaaaagcaaacccttctggacatgattcca
atattaactgagctttgtcatgctcgggacatgcaattggcacttgaatcccttgttgag
gaaggaaattactgcaaggcatttcaagtcctatctgagtatttgcagctactagatagt
tattcagagctctcagcaatacaagagatgagccgtggtgttgaggtttggctgagcaga
actcttcagaagctggattctttactgttgggagtgtgccaggagttcaaggaggaggca
tatattaatgttgttgatgcttatgcattaataggggatgtgtctggtcttgctgagaag
atacaaagcttctttatgcaggaagttatttcagagacccactatgtgttgaaaagtatt
gtggtagaggaccatgatttggacatgcaaaatagcagacttacctacagtgatctgtgc
ctgaggattcctgaatctaaattcagactgtgtttattgaaaacactgggcgttttattt
aagctgatgtgttcatatcatgaaatcatgagctttcagccggagattgagaattctctg
tctcagactttgaaaatgaaaaaggatagtgatatctctcggagttctgtagaggttcag
cacaatgattcactcactagaaattcttgcaattccatgggagttaatggctctctttct
gaatctgtagacaagatgtctggtttgtcttctgcagaggaatctacaaccactatctct
tcagctgagccatcagggactagttcaacatgcataaaatctcatgattttgtggaggag
gctagggatgatggtagtgcagcatccagtagtggatccccatggtatcagctgcgaaaa
gatgctacatcttttgtttcacaaactcttctgaggggtcgtaagaatctttggcaactt
accactagtcgggtgtcagtattgctttcttcagctgcagtttgttctacaagcattcac
caattcttgaaaaattatgaagatttgagtgtcttcatcttggctggggaagcattctgt
gggattgaggcagttgagttcaggcacaaattgaaggctgtttgtgaaaattatttcgtt
gcatttcatcgtcaaagtatatttgcacttaaaatggttctagagaaggaacattggatg
aaattgccaccagatactatagaagttgttaattttgctggtcttgtaggtgatggagca
gctttaattgcttcatccaactcttctaatgctagagtacttcattctgataaagttgca
aattcaattggcagcagtgccaagaaaagtggattttctaattggcttaaatctgggaac
ccttttttaataaaacttaaatatacttccaaagaaggaaatgttaattccccccaactt
aatggtgcaattgctggggaatacgatggaagtattaatgattattttcatagtgataag
ggtacaccaaaaggtagtgattcaagccacatgaatggtatcaatacaatcactgaagat
gaaaatgaagatcttcttgcagattttatagatgaagatagtcaacttccgagtcgaatt
tcaaaatccaataatcgtagaaatcactcttcaaattcgaacaatgatgaaacaagtgcc
caaacaggatcatctctttgccttctcaggtcgatggataaatatgcaaggcttatgcag
aaattggaaattgtaaatgttgagttttttaagggaatgtgccaattgtttgaggttttt
ttccattatgtctttgaaacattcggtcagcaatgcaataattcaaatgcaaaaggctcc
aacaacccacttaattatcggctgaagacagccttgaccaggatagcacaagattgtgat
gagtggttaaaaccccatttgacatcatatttacctgcttcacctgcacctttgacgcat
gtggatgttacacctactagtcctccgagtcaaccaccaggcacatcttttggtctcaag
gaaaggtgtacaggcgccgacactatatctcttgttgctcagattttgtatagatcaaga
actcatctccagtcaatgcttctgcaaagtaatgcagttgaagatttctatgtccacctg
gtggactctgtgccagatcttacagagcacatacataggacaagtgcaagattactgctc
catattgatggctatgtcgatcgaatttctaatgctaaatgggaagtcaaggagcttgga
cttgaacataatggatatgttgatttgttgttgggagaatttaagcactataaaacaagg
cttgctcatggaggtgtttgcaaagaggttcaagaacgcctgttagaatatggagttgac
attgttgctgaaactcttatagaaggtctatcaagagtgaagagatgtaccgatgaagga
cgagccctcatgtcactagaccttcaggttttaatcaatggtctccaacattttgtctcc
ataaatgtcaaaccaaagttgcaaatagttgaaactttcatcaaggcttactacttaccg
gaaactgagtatgttcactgggcagctgctcaccctgaatatagcaaaagtcaaattgtg
gggctgatcaacctggtagcttcaatgaaaggttggaagaggaaaaccaggttggaaaca
ctagaaaagattgagtcagccgttgtgtag
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