Mangifera indica (mango): 123226007
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Entry
123226007 CDS
T07684
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123226007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123226007
Spliceosome [BR:
minc03041
]
Complex B
Other components
Prp19-related factors
123226007
Complex C
123226007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
123226007
NCBI-ProteinID:
XP_044506359
LinkDB
All DBs
Position
9:11993203..11996719
Genome browser
AA seq
481 aa
AA seq
DB search
MAHRFLRDHQADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREFFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARVT
EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK
PQTQRPESEGSDEARQQAVAHSGMLPRSLISQQQNQYQQPGTQDQAAPTPYFNIPPPPQQ
ERAYYPSMDPQRMGALVPSGEGETKSGPEKQQQGQHYNYPPIPPPHGQYHQHLYPPYGYM
PPVAPYQHYPPYQSSMAQPNAPPMTQQYQQSAPPWPAPPPSESAPSTSTPSGAPAPQGSS
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccgatttttgagagatcaccaagctgatggatgggaacgttctgactttcct
atcatctgtgagtcatgtctcggcgacaatccgtatgtgcgaatgacaaaagcagactat
gataaggagtgtaaaatttgcacacggccgtttacggtttttaggtggaggcctggtcgt
gatgcaaggtttaagaagagtgagatttgccagacatgcagtaagttgaaaaatgtttgt
caagtatgtcttctggatctggaatatggattgcctgttcaggttcgtgatactgctctc
agcatcaattcaaatgacgccattccgaagagtgacgtgaacagggaattctttgccgag
gagcatgatcggagggctagggctggtatcgactatgaatcctcatatgggaaggcacgt
ccaaatgataccatcctgaagcttcaaagaacacaaccttactacaagcgcaacagagcg
catgtatgcagtttttatgttcgtggggaatgcacaagaggtgctgagtgcccatatagg
catgaaatgcctataactggagagttgtcgcagcaaaatattaaagatcgttattatgga
gtgaatgacccagttgcactaaagctactcaataaggctggcgaaatgccttctctggaa
ccccctgaggatgaaagcatcaaaactctttatgtgggtggagttgatgcaagggtcact
gaacaagatctgagggataacttttatgcccatggtgaaattgaatccataaagatgcat
ccacaaaaagcatttgcttttgtaacctacacaacacgagaaggtgcagagaaggctgct
gaagagctgtcaaacaaactagttataaagggtctgaggctgaagctgatgtggggaaaa
ccccagacacaaagacctgaatcagaaggttcagatgaagcaaggcagcaggctgtggct
catagtgggatgttgccccgttcacttatatctcagcagcaaaatcaatatcaacagcct
ggtactcaggaccaagctgcaccaacgccttactttaatattcctcctccacctcagcag
gaaagagcctattatccatccatggatcctcaaagaatgggtgcacttgttccatctgga
gaaggggagaccaagtccggtccagagaagcagcaacaaggacagcattataattatcca
cccattccgcctcctcatgggcaataccaccaacatctttatcccccttatggatacatg
cctccagtggcaccatatcaacattaccctccatatcagtcatcaatggcccagccaaat
gccccaccaatgacacagcagtatcagcaatctgctcccccttggcctgcacccccacca
tcagaatctgcaccctcaacatcaaccccttcaggagctcctgcaccacagggatcatcg
cagtaa
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