Mangifera indica (mango): 123226037
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Entry
123226037 CDS
T07684
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123226037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123226037
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123226037
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123226037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
123226037
NCBI-ProteinID:
XP_044506420
LinkDB
All DBs
Position
9:complement(13064308..13070983)
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AA seq
664 aa
AA seq
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MSGLLNLQSSLNGSASNIPDGTGRSFATSFSAQSGAASPVFHHTGTIQGLHNIHGSFNVP
NMPGTLASRNSTMNNVPSGGVQQPTGNLSSGRFASNNLPVALSQLSHGHSGVTNRGGISV
VGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNIGPRITSSMGNMVGGG
NIGRSISSGGGLSVPGLASRLNLSANGGSGNLSVQGQNRLMSGVLPQGSPQVLSMLGNSY
AAGGGPLSQSHVQVNNLSSMGMLNDVNSNDNSPYDINNDFPQLTSRPSSAGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGSNSDYAMDLHQKEQLHENTMSMMQSQHF
SMGRSAGFNLGGTYSSHRPQQQQQLGSSVSSGGVSFSSVINQDLLHLHGSDMFPSSHSSF
HSQTSGPPGIGLRPLNSANPVSGIGTYDQLIQQYQQHQNQSQFHLQQMSAVSQSFRNQDV
KSMQSALSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNASENLHKTFGSPWS
DEPAKGDQEFTVPQCYYAKQPPVLHQGYFPKFSVETLFYIFYSMPKDEAQLYAGNELYNR
GWMYHKDHRYWFIKAPNVEPLVKTNTYERGSYHCFDPSTFEIIHKDNFVIYYEIVDKMPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaatctgcagtcttctctcaatggatcggcgtctaatattccagat
ggtactgggcgatcatttgccacatctttctctgcacagtctggtgcagcttcccctgtt
ttccatcatactggaactattcaggggcttcataacatccatggaagctttaatgttccc
aatatgcccggcacacttgcttcaagaaactcaacaatgaataatgttccatctggcggg
gttcaacaacctacaggaaacctttctagtggaagatttgcatcaaataatcttcccgtt
gctctatcccagttatctcatggacattcaggagtcacaaacagagggggtataagtgtt
gttgggaacccaggattcagtagtaatacaaatggagttggcggttctattcccggaatt
cttccaacttctgcagcaattggtaaccggaatgctgttccaggattgggagtatcccca
attttggggaacattggtcctcggataacaagttcaatgggaaacatggttggtgggggt
aacattggaaggagcataagctctgggggaggattatctgtacctggtcttgcgtctcga
ttaaatctatctgcaaatggtggatctggaaatctgagtgtgcaaggacaaaataggttg
atgagtggtgtgcttccacaaggatctccacaggttctttctatgttaggaaattcctat
gctgctggtggcggtccactttcccaaagtcatgttcaagtgaacaatctaagttctatg
ggaatgttgaatgatgtgaactctaacgacaattctccatatgatataaataacgatttc
ccacagttgacaagtcgtcctagttctgcaggaggccctcaaggtcaattgggttcacta
aggaaacaaggtcttggagttagtcccattgttcaacaaaaccaagagttcagcatccag
aatgaagattttccagctttacctggatttaaaggcagtaattctgactatgctatggat
ttgcatcagaaagaacaacttcatgaaaataccatgtcaatgatgcaatctcagcacttc
tctatgggcagatctgctgggtttaatttaggtggaacctattcctctcatcgtccacag
cagcaacaacaacttggttcatcagttagtagtggtggtgtctccttttcatctgttatc
aaccaggatcttcttcatttacatggttctgatatgttcccatcttcgcattcaagcttc
cactcacagaccagtggaccacctggcattggactaagacctttgaattctgctaatcca
gtttctggtattggcacatatgaccagcttattcagcagtatcagcaacatcagaaccaa
tctcaatttcacctacaacagatgtctgctgtcagtcagtcatttaggaatcaggatgta
aaatccatgcagtcggcactttctactcctgatccatttggcttacttggcttgttaagt
gtgataaagatgagcgatcctgatctgacttcacttgcacttggaattgacctgacaaca
ctggggttgaacttgaatgcatctgaaaatcttcataagacttttggttcaccatggtct
gatgaaccagctaagggcgaccaagagttcactgtacctcaatgttattatgctaaacaa
ccacctgtgctacatcaaggttacttcccaaagttttcggtggaaacattgttctatata
ttttacagcatgccaaaagatgaggcccagttatatgctggaaatgaactttataataga
ggttggatgtatcacaaggatcatcgttattggttcatcaaagcccctaacgtggagcca
cttgttaagacgaacacttatgagcgagggtcttatcactgttttgatccaagcactttt
gaaataatccacaaggataattttgtaatatattacgaaatcgtggataagatgccagct
ttaccgcaacattag
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