Mangifera indica (mango): 123226080
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Entry
123226080 CDS
T07684
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123226080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123226080
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
123226080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
PRP4
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD_LRWD1
WD40_like
Endonuc-MspI
Motif
Other DBs
NCBI-GeneID:
123226080
NCBI-ProteinID:
XP_044506489
LinkDB
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Position
9:complement(7610626..7615644)
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AA seq
578 aa
AA seq
DB search
MEADEGNPASTSVLESSAVVSDNQTLMPIVETIPALPVQPIIPPVVPAAIPPVIVPSIAP
ILTIPPPQVPAPLAPLPVRPPIFKPTVPPQNGEVRTSDSDSDRDDLDSTRATTGEYEISE
ESRQVRERQEKAIQDLLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLR
MLMAKLDAEGQLEKLMKAHEEEEAAATATADDAEEEMIQYPFYTEGSKALLNARIDIAKY
SIVRAASRLQRAHRKRADPDENIDAEIDWALRQAESLFLDCSEFGDDRPLSGCSFSHDGN
LLATCALSGVAKIWSMPKVEKVSALKGHTERLTDVAFSPVQNHLATASADRTARLWNTDG
SLLNTFEGHLDRLARISFHPSGKYLGTTSFDKTWRLWDIDTGVELLLQEGHSRSIYGIAF
HHDGSLAASSGLDSLARVWDLRTGRSILAFEGHVKPVLGISFSPNGYHLATGGEDNTCRI
WDLRKKRSFYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTAKVWSGRDFKLVKTLSGHEA
KVTSLDVGADGCSVATVSHDRWIKLWSINRKEQAMDVD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgacgaaggcaatcctgcatcaacctcagtgttggagtcttctgcagtagtc
tctgataatcaaactctgatgcctattgttgaaacaattccagctcttcctgtccaacct
attattccaccagttgtcccagctgctataccaccagtgattgtgccgtctatagctcca
atactgacaattcctcccccccaagttccagctccattagcacctctaccagtccgacct
cctatctttaagcccactgtgccgcctcaaaatggggaggtgagaaccagtgattcagat
tctgatcgtgatgacttagattcaacacgggctaccacgggtgaatatgagatttcagag
gagagcagacaagtaagggagcgccaggaaaaggcaattcaggatcttctcatgaagcga
cgtgcttctgctcttgcagtgcctactaatgacatggctgtccgggctcgtcttcgccgg
cttggtgaacccataactctttttggggaacgagagatggaaagacgagataggttgcgg
atgcttatggcaaagctggatgctgaagggcagttggaaaagctgatgaaagctcacgaa
gaagaggaggctgccgcaactgctactgcagatgatgctgaagaagaaatgatccagtac
cctttttatactgagggttcaaaggcactcttgaatgctagaattgatattgcaaaatat
tctattgttagggcagcatctcgtcttcaacgtgcgcacaggaaaagagctgatccggat
gaaaacattgatgcagaaattgattgggctctgaggcaggcagagagtttgttccttgat
tgcagtgagtttggggatgatcgaccactctctggttgctccttctctcatgatgggaat
ctacttgctacatgtgctttaagtggagttgctaaaatttggagcatgccaaaagtggaa
aaggtttctgccttgaagggacacactgaacgattgactgatgttgcattttctcctgtg
caaaatcatctggctactgcttctgctgaccggactgcaaggttatggaacactgatgga
tctctcctgaatacttttgaaggccatctggatcgtcttgctcgaatttctttccatcca
tctgggaaatacttgggcacaaccagctttgacaaaacatggagactgtgggacatagat
acgggagtcgagttgcttcttcaagaaggtcacagtaggagcatctatggaattgccttc
caccatgatggatctttggcagcttctagtggactggattcattggcacgtgtttgggac
ctgcgtacaggaagaagtattcttgcctttgaaggccatgtgaagccggtccttggcatt
agtttttcacccaatggataccatctagcgactggtggtgaggacaatacttgtcgcata
tgggacttgaggaagaaaagatccttctatgttattccagcacactcaaatcttatatca
caagtgaaatttgagcctcaagaagggtatttcctggtgactgggtcatatgacatgaca
gctaaggtttggtctggccgagactttaagcttgtaaaaaccttgtcagggcatgaggca
aaagttacgtctctggatgttggtgcagatgggtgttccgtagcgacagtttcacatgat
aggtggatcaagctgtggtcaatcaatagaaaggagcaggcaatggatgttgactga
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