Mangifera indica (mango): 123226550
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Entry
123226550 CDS
T07684
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
minc
Mangifera indica (mango)
Pathway
minc03022
Basal transcription factors
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123226550
09124 Replication and repair
03420 Nucleotide excision repair
123226550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123226550
03400 DNA repair and recombination proteins [BR:
minc03400
]
123226550
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123226550
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123226550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
123226550
NCBI-ProteinID:
XP_044507016
LinkDB
All DBs
Position
9:complement(13444726..13448404)
Genome browser
AA seq
423 aa
AA seq
DB search
MKNSEGRRLNGDAEEDDEDEDEINGGLEAWERSYADDRSWEALQEDESGLLRPIDNSAVY
HAQYRRRLRARSLSATSSRIQKGLIRYLYIIIDLSRAAAEVDFRPSRMAVVAKNVEAFVR
EFFDQNPLSQIGLLTIKDGVAHCLTDLGGSPESHIKALMGKLECSGDPSLQNALDLTQAL
LNQIPSYGHREILILYSALSTCDPGNIMETIQQCKKSKIRCSVIGLSAEMFICKHLCRET
GGSYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSTSICSCHKEAKI
GVGYTCPRCKARVCELPTECQICGLQLVSSPHLARSYHHLFPIAPFDEVPPSSLNDLHIR
SQKICFGCQQTLLNLGKPGLCVVCPKCKKYFCLECDIYIHESLHNCPGCESFRHLKPVTA
GEG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacagcgagggaaggcgattgaacggagatgcagaagaagatgatgaagatgag
gacgaaattaatggagggctcgaagcgtgggaaagaagttacgcagatgacagatcgtgg
gaggctcttcaagaggacgagtcggggctgcttcgacccattgacaactcagccgtctac
catgctcagtatcgtcgccggcttcgtgcccgttctctttctgccacctcttctcgaatc
caaaagggtctcattcgatatctctacattatcatcgatctttctcgggcagctgcagag
gtggattttcgaccaagtcgaatggctgtggttgcaaaaaatgtagaggcttttgttagg
gagttttttgaccagaatcctcttagtcaaattgggctgttgactataaaggatggagtt
gctcattgcttaactgatcttggcggcagccctgagtcacatataaaagctttgatgggc
aagttggaatgctcaggtgatccttccctacaaaatgccttggatcttacgcaagcactt
ctcaatcaaattccatcatatggacatcgcgaaattctgatcttatattcggctctcagt
acttgtgatccaggaaatataatggagaccattcagcaatgtaagaaatctaaaataaga
tgttcagttattggcctctctgcagagatgtttatatgcaaacatctctgccgagaaact
ggtggatcatactctgtagccttggatgagtctcactttaaggagttaatactggagcat
gcacctccacctcctgcaatagcagaatttgcaattgccaatttgatcaagatgggtttc
ccacaaagagcagcagagggctctacctcaatctgttcatgtcacaaagaagctaaaatt
ggtgtggggtacacttgtccaagatgcaaagcacgtgtctgtgaactacctactgaatgt
cagatttgtgggttgcaacttgtttcctcaccccatttggcaaggtcttatcatcatcta
tttccaattgcaccatttgatgaggtgcctccatcaagtttgaatgatctacatatcaga
tcacaaaaaatttgttttggttgtcagcaaactcttctgaatcttggaaaacctggcctt
tgtgttgtttgtccaaaatgcaagaagtacttctgccttgagtgtgacatttatattcat
gaaagcttacataactgcccaggttgcgagagctttaggcacttgaagcctgttactgct
ggtgaaggatga
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