KEGG   Mangifera indica (mango): 123226588
Entry
123226588         CDS       T07684                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
minc  Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:minc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:minc03009]
    123226588
Ribosome biogenesis [BR:minc03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    123226588
SSDB
Motif
Pfam: WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd NBCH_WD40 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_Vps41 WD40_Gbeta Beta-prop_IP5PC_F PAC11 Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_NOL10_N WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_Aladin PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_NWD2_C Phage_H_T_join_2 TAF1C_beta-prop
Other DBs
NCBI-GeneID: 123226588
NCBI-ProteinID: XP_044507074
LinkDB
Position
1:complement(24923421..24925192)
AA seq 426 aa
MSSSSSSASSLHEVILTSSPEGPILAYNPSSGAALARFSSSRSPRRGLGFAGKTFIVASH
ISPTTASGSIHLYNWWASTPLHNLPVPEPVAPLVSTPDGSYLFTGGISGSIYVISLPSGD
ILRSFAAHKKPVTCLEISVDGSLLISGGDDGRIVTAPIFQLVDHHASGDENPSDLMLQKF
AAHNSSVTAVLSCRGSFNSLIVSSSTDCTCKLWRLNGIHLHTLTFPSAIMGVTLDPTQTE
IYAAGSDGLIYRGNLKVESEKPKIQDNELTTMAQKHTGMVVSVAMANEGKNLVSASEDGS
VYIWEVESGEVLFVLGNETGSISEMVVVASGIGESKGCGNGNESGKVENYENGGGVFEVY
GEELLRRSMKENLDLEEVLQVATNNRGKAIDMLESAISMYEKLLELILKEAMRGSTINNL
KDEDGM
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgtcttcttcctcttcttctgcctcttctttgcatgaagtcattctcaccagctcaccg
gaaggccccatcttagcctataacccgtcctcaggtgctgctcttgctcgtttctccagc
agccggtcaccccggcgaggccttggtttcgctggaaagaccttcattgttgcctcccat
atctccccgacaactgcttcaggatcaattcacttatacaattggtgggcttcgactccc
ctgcataatctccctgtccctgaacctgttgctcctctagtctccactcctgatggctcc
tacttgttcactggtgggatttctggctccatctatgtcatttctctcccctcaggggac
attcttagatcatttgctgcccataagaaacctgtaacttgcctggaaatcagtgtcgat
ggatcccttttgatctctggtggtgacgatggaagaatcgtcacagcaccaatcttccaa
cttgtggatcaccatgcctcaggtgatgaaaatcccagtgacttgatgttgcagaaattt
gcagcacacaacagttcagtcacggccgttctttcttgtaggggatcatttaactctcta
atagtttcatcttcaacagattgcacctgcaagttatggagactgaatggaatccatttg
cacacgttgacatttccttctgcaatcatgggggtgacactggacccaactcagacagaa
atctacgccgctggatctgatggtttaatttacaggggaaacctcaaggttgaaagcgaa
aaacccaaaatccaggacaatgaattaacaacaatggcgcaaaaacacacagggatggtg
gtatctgtagctatggcgaacgaaggaaagaatctggtgtcagcttcagaagatggaagc
gtttatatatgggaagttgaatcgggggaagtcttatttgtgctgggaaatgaaacgggg
agcatcagcgagatggtggtggtggcttcaggaattggtgagagcaaagggtgtggaaat
ggaaatgaaagtgggaaagttgaaaattatgaaaatggaggtggggtttttgaggtttat
ggtgaagagttgttgagaagatcaatgaaggaaaatttggatttggaagaagtgttgcag
gtggctacaaataacaggggcaaagccattgacatgcttgagtctgcaatatcaatgtat
gagaagctactggaactcattctcaaagaagccatgagaggctccaccattaataatcta
aaagacgaagatggcatgtaa

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