Mangifera indica (mango): 123227545
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Entry
123227545 CDS
T07684
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123227545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123227545
03041 Spliceosome [BR:
minc03041
]
123227545
03036 Chromosome and associated proteins [BR:
minc03036
]
123227545
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123227545
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123227545
Complex B
123227545
Complex C
U2 SnRNP specific factors
123227545
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123227545
TFTC complex
123227545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
123227545
NCBI-ProteinID:
XP_044508497
LinkDB
All DBs
Position
10:7345031..7361192
Genome browser
AA seq
1388 aa
AA seq
DB search
MAVSEEECSTTKSQSSPSSTSVVAPSKNVHYLAKCVLKGSVVLHVAYGHLRSPSSNDVVF
GKETSIELLIICEDGIAQSVCEQAVFGTIKDLAVTPWNKKFYPRNQQMMEKDLLIVISDS
GKLSFLTFCNEMHRFFPVAHVELSNPGNSRQQLGRMLAVDSSGCFIAVSAYEDRLGIFSL
STSLGSDIIDEKICYPPESESDPSTSRSIQSTIINGTIWSMCFISKDLTQQCKEHYPVLA
IILNRRGALLNELLLLGWNIRDGTICVISQFFEAGPLAHNIVEVPHSYGFAFLFRIGDAL
LMDLRDPQNPCCVYRTSLNFLPPAVEEQHFVEESYKVHDVEDEGLFNVAESLLELGDDPM
CIDGDVADAKIPSKHVCSWSWEPENDNSPKMVFCVDTGEFFMIEVAFDSDGLKVLLSECL
YKGQPCKELLWVEGGFLAALVEMGDGMVLKVENGRLIHMSPIQNIAPILDMSVVDYHDEK
RDQMFACCGVAPEGSLRIIRSGISVEKLLRTASIYQGITGTWTLRMKVTDPYHSFLVLSF
VEETRVLSVGLSFSDVTDSVGFRPDVCTLACGLVNDGLLIQIHQNAVRLCLPTQVAHSEG
IPQSCPVCTSWFPDYVSISLGAVADNLIIVSTSNPCFLYILGVRSLSEYHYEIYEMQHLT
LQNELSCISIPQKRLAERKSSSQIGLVDNGTVASLPVGVDIGYTFVIGTHRPSVEILSFV
AEEGLRVLASGTISLTSTMETAISGCIPQDVRLVLVERLYVLAGLRNGMLLRFEWPPASK
MSLPELLSHGPISSSLINASTVTLNSFGPQISSVNLSEKTKDALPINLQLIATRRIGITP
VFLVPLSDSFDADIIALSDRPWLLQTARHSLAYTSISFQPSTHATPVCSAECPKGILFVS
ENSLNLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLVVMRTELTGDTCTSDISCVNPL
SGTVVSSYKLQPGETGKSMELLRVGKEQCVVVGTSLSPGPAIMPSGEAESTKGRLLVFHI
DCLQNLDSGLMTICSKAGLSCQQTSPFREIIGYATEQMSSSSLCSSPDDASCDGVKLEET
EAWYLRLVYSMPWPGMALAICPYLGRYFLASAGNAFYVCGFPNDNFLRVKKFAVGRTRFM
ITSLTAHSTRIAVGDCRDGILFYSYHEQSKKLEQIYCDPSQRLVADCILMDVDTAVVSDR
KGSIAVLSCSDREEDNASPESNLTVSCAYHMGEIAMSIRKGSFIYKLPADDVLGGCPSPN
TNADPFQNTIIASTLLGSIIIFIPLSREEYDLLEAVQAKLVVHPLTAPILGNNHNEFRSR
ENPVATPKILDGDMLSQFLELTSKQQEAILSLPLSFLDTKSSSKLSPSSPIPVNQVVQLL
ERVHYALN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaggaggagtgttcgacaaccaagtcgcaatcttctccgtcctccacg
tcggtagtcgcgccttctaaaaacgttcactatctcgctaagtgtgttctcaaaggcagc
gtcgtcctccacgttgcctacgggcacctccgctctccttcctccaacgacgtcgttttc
ggcaaggagacatccatagaattgttaataatttgtgaagatgggattgctcaatcagtt
tgtgagcaggctgtatttggcacaattaaggatcttgctgtcactccttggaataagaag
ttctatccacgaaatcaacagatgatggagaaagatctattgattgttatctctgattct
gggaagctctcatttctgactttctgtaatgaaatgcacaggtttttccctgtggcgcat
gttgaactttctaatccaggaaactcaaggcagcagcttggacgaatgctagctgtagat
tccagcggctgtttcattgctgttagtgcatatgaagacagattgggtattttctccctc
tcaacatctttggggagtgatattattgatgagaaaatatgctatcctcctgaaagtgaa
agtgatccaagtacttctagaagcatccagagcactattataaatggtaccatatggagc
atgtgttttatttcaaaagatcttacccaacaatgtaaagagcattatcctgtactagcc
attattctgaataggagaggagcactcctcaatgagctgctattattgggatggaatatt
agggatggcactatatgtgttatttcacaattctttgaagctggaccactagctcataac
attgttgaagttcctcactcttatggatttgcctttttgttcaggattggtgatgctctg
ttaatggatcttagagatcctcagaacccatgttgtgtttatagaacaagcttaaatttt
ttacctcctgcagtggaggaacaacattttgttgaagagtcttataaagtacatgatgtt
gaagatgaaggtttgtttaatgttgctgaatccttactggagctgggtgatgatccaatg
tgtatagatggtgatgttgctgatgcaaaaataccctcaaaacatgtgtgctcctggagt
tgggaaccagagaatgataacagtccaaagatggtattttgtgtagataccggagagttt
tttatgattgaagttgcttttgattctgatggccttaaagtattactatcagaatgcctc
tacaaaggtcaaccatgcaaggagcttttatgggttgagggtggtttcctggctgcactt
gtagaaatgggggatggaatggtcttgaaagtggaaaatggaaggctaatacacatgagt
cccattcaaaacatcgcaccaatattggatatgtcagttgtggattaccatgatgagaaa
cgtgatcaaatgtttgcttgttgtggagtagcaccagagggatcattaaggattattcgt
agtggtattagtgtggaaaagctattgaggactgcttctatttatcaaggcatcactggt
acttggacattgaggatgaaagtaactgatccttatcattcttttcttgtactgtcattt
gtggaagaaaccagggtactttcagttggtttaagctttagtgatgtgactgactctgtt
ggattccggcctgatgtctgtactttggcatgtggccttgttaatgatggtttgctgatc
cagattcaccaaaatgcagttaggctttgtttaccaacccaggttgcccattctgaaggc
atccctcagtcatgtcctgtgtgcacatcttggttcccagattatgtaagtatcagtttg
ggggcagttgcagataatctgatcatcgtttcaacttctaatccatgcttcttatatatt
cttggggtcagatcactctcagagtatcattacgaaatatatgaaatgcagcatttgaca
ttgcaaaatgagctatcatgtatttccatacctcaaaaacgtttagctgaaaggaaatca
agttctcagattggtctggttgacaatggcactgttgcttcccttcctgttggagttgac
attggttatacctttgttattggaacacataggccttcagtggaaattctgtcatttgta
gctgaagaaggcctaagagtacttgcttctgggacaatttcattgacaagtactatggaa
actgctatcagtggctgcattcctcaagatgtgaggcttgtattagttgaacggttatat
gttcttgcaggattgaggaacggtatgctccttcggtttgagtggcctcctgcctctaaa
atgtctttacctgaattacttagtcatggtcctattagttcttctttgataaatgcaagt
acagtgactctgaattcttttggcccgcaaatatcttctgttaatttatctgagaagact
aaggatgcacttccaattaatcttcaattgattgccacccgtcgcattggcattactcct
gttttccttgttcctctaagtgattcatttgatgcagacataattgctctcagtgacaga
ccatggttgttacaaactgcaaggcacagccttgcttatacttctatctcatttcaacct
tcaactcatgcgactcctgtatgttctgctgagtgccctaaaggaattttatttgtttca
gagaacagtttaaatttggtggagatggtgcacagtaagaggcttaatgtgcagaaattt
catcttggaggcactccaaggaaggtcctttatcatagtgaaagcaggttattggttgtg
atgaggactgaattgactggtgatacttgtacatctgatatatcttgtgtaaatcccctc
agtgggacagtggtgtcatcatataaacttcaacctggggaaacaggaaaatctatggag
ttactgagggttggaaaagaacagtgtgtggtggttggaaccagtctgtctcctggtcca
gctatcatgcccagtggtgaggctgaaagtacgaagggccgcctacttgtttttcatatt
gattgcctgcaaaatttggatagtggtttgatgacaatttgttcaaaggccgggttatct
tgtcaacaaacttcaccattccgggaaattattggatatgccacagagcaaatgtccagc
agtagtctctgcagtagcccagatgatgctagctgtgatggggttaaacttgaagaaact
gaagcatggtacctgcgactagtttactcaatgccatggcctggaatggcgcttgcaatc
tgtccatatcttggtcgttacttcttggcatctgctggtaatgccttctatgtgtgtggt
tttccaaatgataattttctgagggtgaaaaagtttgctgttggaaggacacgttttatg
ataacatcgttgactgctcattcgactagaattgctgtgggagattgccgtgatggcatc
cttttttattcatatcatgagcaatccaagaaactggagcaaatatactgtgatccatca
cagaggttagttgctgattgtattcttatggatgttgatacagctgttgtttcagatcgt
aaggggagcattgctgttctgtcatgttcagatcgcgaggaagacaatgcaagtccagag
tccaacttaactgtgagttgtgcttatcatatgggtgagatagccatgagcatcaggaag
gggtcttttatatacaaacttccagctgatgatgtcttggggggctgccctagtcccaat
acgaatgctgacccttttcagaacactattattgccagtacacttttaggaagcataata
atattcattcctttatcaagggaagaatatgaccttttagaagccgtacaagctaagctt
gtggtccatccattaactgcgcctatacttggaaacaaccataatgagtttcgtagtcgt
gaaaacccggttgctacaccgaaaatacttgatggcgacatgctatcgcagttcttggag
ctgacaagtaaacaacaagaggctatattatcactacctcttagctttcttgatactaaa
tctagttcaaaactgtctccctcttcacccattcctgttaatcaggttgtgcaactcctt
gagcgtgttcattacgccctgaattga
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integrated database retrieval system
