Mangifera indica (mango): 123229513
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Entry
123229513 CDS
T07684
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
minc
Mangifera indica (mango)
Pathway
minc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123229513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123229513
03036 Chromosome and associated proteins [BR:
minc03036
]
123229513
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123229513
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123229513
PBAF complex
123229513
GBAF(ncBAF) complex
123229513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF7685
Motif
Other DBs
NCBI-GeneID:
123229513
NCBI-ProteinID:
XP_044511308
LinkDB
All DBs
Position
11:6134457..6140634
Genome browser
AA seq
799 aa
AA seq
DB search
MPASPSFHSVPDSRKWKRRKRELRKPKHEDDDVDDEDEEQDNNNNNNNNDNETDNHVNNC
NGNMDNGDDIQHASTAPDPVGNDNEVLIDGGTRICDFPRVVRLRVNRPHASVMNLVATER
ANLVGESSGRSSVMVLENISYGQLQALSAVPADCAALDPERGDGGNLASCVITPPQIMEG
KGVVKRFGNRVHVVPMHSDWFSPATVNRLERQVVPHFFSGKSPEHTPEKYMECRNYIVAK
YMDNPEKRLVVSDCQDLVEGINNEDLNRIFRFLNHWGIINYCAAAPSPEPWNTGSYLRED
FSGEVHVPSATLKSIDSLIKFDKPKCRVKAAEVYSSSSCHDDDFLDLDNRIRERLSENNC
NYCFQQIPDVYFQSQKEADVLLCSDCFHEGRFVIGHSSLDFIRVDPTKDYGDMDGETWSD
QETFLLLEGIEIYNDNWNEIAEHVGTKSKAQCILHFVRLPMEDGVLESIEVPNSSKPSDS
SSRDDRGRLHSTLNGDLPGSCLQEADTESQLPFSNSGNPVMALVAFLASAVGPRVAAACA
HAALVTMSEQMEGSGHSNRMNAESVRREGGFHGDNANSTQQKEENLTHGSWGQNGAEVSP
LAADKVKMGAKAGLSAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETL
LMRECEQVEKTRQRFAADRARVVLARFGTAGVPSQMNMPSVAPSMVNSMGDNRQEVMSAS
SSQPSILGYGGKPNQPVHPHMQFRPQQSMFPMGQRMPITTLQASSSVPSNVMFSNSGNAQ
PAMNHPMLRSVSGTSSGLG
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcaccttcctttcattcagttccagatagtcgaaaatggaagaggcgaaag
cgggagctgagaaaacccaaacacgaagacgacgacgtagacgacgaagacgaagaacaa
gacaacaacaacaacaacaacaacaacgacaacgaaacggacaatcacgttaataattgt
aatgggaatatggacaacggcgacgacatacagcacgcctccacggcaccagatccggtg
gggaacgacaacgaggtcttgattgacggtggcacgcgcatctgcgactttcctcgtgtg
gttcggctaagggtgaaccggccacacgcgtctgtgatgaaccttgtggcgactgagagg
gcgaatttggtcggggagagtagtgggaggagttcggtgatggtgttggagaatatttcg
tacgggcagctgcaggctttgtcggctgtgcctgccgattgcgcggcgttggatccggag
aggggtgatggcgggaatttggcgtcgtgtgtgattactcctccgcaaattatggaagga
aagggggttgtgaagaggtttggaaatagagttcacgttgttcctatgcattcagattgg
ttttctcctgccacagtaaatcgactggagagacaagtggtgccacattttttctctgga
aagtcaccagaacatacaccagagaaatacatggaatgtaggaactatattgttgccaag
tacatggataatccagagaagaggcttgtggtttctgattgccaggatttggtagaaggt
attaacaatgaagatctaaatcgaatttttcggttccttaatcactgggggatcattaat
tactgtgctgctgcaccaagtcctgagccttggaatactgggtcctatttgagggaggat
tttagtggggaggttcatgtgccatcagccactttaaagtccattgacagtttgatcaaa
ttcgacaagcctaagtgtagagtcaaggcagctgaagtatattcatcatcatcatgtcat
gatgatgatttcttggacttggacaacagaattcgagagcgtttatcggaaaataattgc
aattattgttttcaacaaattccagatgtgtactttcagtcacagaaggaggctgatgtt
cttctatgctctgattgtttccatgaggggagatttgttattggtcattcaagcctagat
tttattagggtggatcctacaaaagattatggtgatatggatggagaaacttggagcgat
caagaaacatttttgctgcttgagggtatagaaatctacaatgataattggaatgaaatt
gcggagcacgttggcaccaagtcaaaagcacaatgcatcctgcattttgtccgtctaccc
atggaggatggtgtactagaaagtattgaggttcccaactcgtcgaagccatctgattcg
tcaagtagagatgatcgtggaagattacattcaactttaaatggtgatctaccaggatca
tgccttcaagaagctgatacagaaagtcaacttccattttcaaattctgggaatccggtt
atggccttggttgcttttttggcctctgctgttggacctagagttgctgcagcttgtgcc
catgcagccttggtaacaatgtctgaacagatggaaggatcaggacatagcaacagaatg
aacgcagaaagtgtacgcagggaaggtggttttcatggtgataatgcaaattcaacacag
caaaaagaagagaacttgacccatggttcgtggggtcaaaatggggcggaggtttctcca
ttagctgcagataaagtgaaaatgggtgcaaaagctggtctttctgctgcagcaacaaag
gcaaaactatttgcagatcatgaagagcgagaaattcaaaggctttctgctaatataata
aatcatcagttgaagagattggagttgaagttgaaacagtttgcagaagtggaaaccttg
ctaatgagagagtgtgaacaagttgagaagacaagacagaggtttgctgcagatcgggcc
cgtgttgtattggctcgatttgggactgctggagtcccatcacagatgaacatgcctagt
gttgctccttccatggttaacagcatgggtgacaatcgacaagaagtaatgtcagcctca
tcttcacagccaagtattttaggttatggcggcaaacccaaccaaccagttcatccccac
atgcagtttaggccgcagcagtctatgtttccaatggggcagaggatgcccataacaaca
ttacaagcatcatcttctgtaccttcaaatgtgatgttcagcaactcaggaaatgcccag
cctgctatgaatcatccaatgctgaggtccgtatcagggactagttcaggccttggatga
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