Mangifera indica (mango): 123229546
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Entry
123229546 CDS
T07684
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123229546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123229546
03041 Spliceosome [BR:
minc03041
]
123229546
03032 DNA replication proteins [BR:
minc03032
]
123229546
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
123229546
Spliceosome [BR:
minc03041
]
Complex A
U1 snRNP components
Sm proteins
123229546
U2 snRNP components
123229546
Complex B
U1 snRNP components
123229546
U4/U6.U5 tri-snRNP components
123229546
Complex C
U2 snRNP components
123229546
DNA replication proteins [BR:
minc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
123229546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
123229546
NCBI-ProteinID:
XP_044511370
LinkDB
All DBs
Position
11:694710..697209
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA
APGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtaggagcttggggataccagtgaagctattacacgaggcatcaggccatgtggtc
acagtggagctcaagagcggggagctctacagaggaagtatggttgagtgtgaagataac
tggaattgtcagctcgagaacatcacctacactgctaaggatgggaaggtttcacagctt
gagcatgttttcattcggggcagcaaagtcaggtttatggtcataccggacatgttaaag
aatgctccaatgttcaagcgtctagatgctagaatcaagggtaagagctcatcgattgga
gttggtaggggcagggctgtggcaatgcgggctaaagctgcagcagctggccgtggagca
gcacctggtaggggtgttgtaccacctgttcgaaggtaa
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integrated database retrieval system
