Mangifera indica (mango): 123229583
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Entry
123229583 CDS
T07684
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
minc
Mangifera indica (mango)
Pathway
minc03082
ATP-dependent chromatin remodeling
minc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123229583
03083 Polycomb repressive complex
123229583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
minc03036
]
123229583
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
123229583
Histone modification proteins
HAT complexes
HATB complex
123229583
HDAC complexes
Sin3A-HDAC complex
123229583
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
123229583
PRC2.2
123229583
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
123229583
Heterochromatin formation proteins
Other heterochromatin formation proteins
123229583
Chromatin remodeling factors
NuRD complex
123229583
NuRF complex
123229583
NuRF complex (fruit fly)
123229583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
WD_LRWD1
MIOS_WD40
eIF2A
Beta-prop_WDR19_1st
Beta-prop_HPS5
NBCH_WD40
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
123229583
NCBI-ProteinID:
XP_044511437
LinkDB
All DBs
Position
1:complement(23031124..23034512)
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDERSDYGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHTTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKALEATQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL
FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDLPGDEP
AKDS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagacgaggaagaaatgagaggagagatagaagaaaggctgataaatgaagaa
tacaaaatctggaagaaaaacactccatttttgtatgatctggtcatcacccacgctctc
gaatggccttctctcactgttgagtggcttcctgacagagaggagccgcctggcaaagac
tattctgttcaaaagatgattctcggaacccacacttctgagaatgagcctaattatctt
atgcttgcccaggtccagcttcctcttgatgattctgaaaatgatgctcgccactatgat
gatgaacgctctgattatggtggttttggatgtgctaatggcaaggttcaaattattcag
caaatcaaccatgatggagaggttaatcgggctcgttatatgcctcagaacccttttatc
attgcaactaagactgttagtgccgaggtctatgtctttgattatagcaaacatccatct
aagcctcctctcgatggtgcatgtagtcctgatttaaggctccggggccacaccactgaa
ggttatggtttatcttggagcaagttcaagcagggccatttgctcagtggttctgatgat
gcccaaatatgtttatgggatattaatgcaactcctaaaaataaagcccttgaggctaca
cagatttttaaggttcatgaaggtgttgtcgaagatgtagcatggcatctgagacatgaa
tacttatttggttctgttggggatgatcaatacctgcttatatgggatctacggacacca
tcagtcagcaagcctgtccaatctgttgttgctcaccaaagtgaggtgaactgcctggca
ttcaatccatttaatgagtggattttagctacggggtctacagacaagacagtcaagttg
tttgacctgcgcaaaattagtacagcactccacacatttgatagtcacaaggaagaggtt
tttcaagttggatggaatccaaagaatgagactatcttagcttcttgttgtcttggtaga
aggcttatggtttgggacctcagcaggattgatgaggagcagacaccagaagatgcagaa
gatggtccaccagagttgctcttcattcatggtggtcacacaagtaaaatttcagatttt
tcatggaacccgtgtgaagattgggttattgccagtgtagcagaggacaacatactacaa
atttggcagatggcagagaacatttaccatgatgaagatgatttacccggagatgaaccc
gcaaaggactcctaa
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