Mangifera indica (mango): 123230204
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Entry
123230204 CDS
T07684
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
minc04121
]
123230204
Ubiquitin system [BR:
minc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
123230204
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_Aladin
TRM82_WD
Beta-prop_RIG_2nd
ASA1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_VPS8
Beta-prop_WDR41
WDR90_beta-prop_4th
CNOT10_TPR
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
123230204
NCBI-ProteinID:
XP_044512300
LinkDB
All DBs
Position
11:4501155..4510876
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AA seq
756 aa
AA seq
DB search
MASWPFHDGNIYNFLDSRLTDTRRDVNHSMQMHSSLLRRLSLERELEGHQGCVNAISWNS
TGSLLISGSDDTRINIWSYSSRKLLHSIETGHSANIFCTKFVPETSDELVVSGAGDAEVR
LFNLSRFSGRGLDDNAIPPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFREG
ASCPPAGSSHQECRNVLLDLRCGARRSLVDPPKQSLALKSCDISSTRPHLLLVGGSDAFA
RLYDRRMLPPLTSCQKRMPPPPCINYFCPMHLSEHGCSNLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNHDRGSTMRYTGGDASKMMSFMHVLDGVQLHPPVSDVSCNGLAARLEKCRML
IEIAGKYLDEGGNTFYGIEACNEVLEGHGSEIGSMLRHECLCTRAALLLKRKWKNDAYMA
IRDCYNARRIDNTSFRAHYYMSEALEQLFRYKEALEFALATQCLDPSNSSVAEKVENLKK
QIAAAESEKNNKVNDGAARPEPRSGRVLSLSDILYRSEANSDASQDGPRSEREDSDYDEE
LEVDFETSISGDEGRDVETNVLHGSLNVRIHRRGDSTREIGGNGSCGSPASSSQNSWTSY
QPEAAVDMKRRFVGHCNVGTDIKQASFLGQQGDYVASGSDDGRWFIWEKQTGRLIKMLVG
DDAVVNCVQCHPFDSVVATSGIDNTIKIWTPSASVPSIVAGGAAGPETADVLEAMESNQQ
KLSRSREPILPFELLERFRMHEFSEGSLHPFECAQS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttggccgtttcacgatggcaatatctataatttcctcgatagcagactcacc
gacactcgtcgcgatgttaatcacagtatgcaaatgcactcatcattgctaaggaggctt
tcactggagagagaattagaggggcatcagggttgtgtgaatgctatttcttggaattcc
acaggttcacttctgatatctgggtcagatgatacacgtatcaacatttggagctattct
agtcgaaagcttttgcattccatagagactgggcactctgcaaacatattttgtacaaaa
tttgtccctgagacttctgatgagcttgtggtttctggggctggagatgcagaagttcgg
ctattcaatctttctcgatttagtgggagaggccttgatgataatgctattcctccatca
gctctgtatcagtgtcacaccagaagagtaaaaaaattagctgttgaagttggaaaccca
catgtggtttggagtgcaagtgaagatgggactttgagacagcatgattttcgggagggt
gcttcttgtcctcctgctggatcttctcatcaagaatgtcgtaatgttctgcttgattta
cgttgtggggcacggaggtctctagttgatccccctaaacaatctcttgctttgaaatct
tgtgatattagttccactaggccccatttactcctggttggtgggagtgatgcatttgct
agattatatgatagaaggatgctccctccattgacttcctgtcagaaaagaatgccacca
cctccttgcattaactatttctgccctatgcatctttctgaacatggttgttcaaacttg
cacctgacacatgttacttttagtccaaatggagaagaggttctcctcagttatagtgga
gagcatgtatatcttatggatgtaaatcatgatcgtggaagtactatgcgatatactgga
ggagatgcttcaaaaatgatgagtttcatgcatgtacttgatggggttcaactgcatcca
ccagtatctgatgtttcctgcaatggtcttgctgccaggcttgaaaagtgcaggatgtta
attgaaattgctggaaagtatttagatgaagggggaaatactttctatggaattgaggcg
tgcaatgaagttttggaagggcatggtagtgaaattggatccatgctgaggcatgaatgt
ctttgcacacgtgctgccttattgcttaagcgaaagtggaaaaatgatgcctatatggcc
ataagagattgctacaatgctcggagaattgataacacttcgtttagagctcactactac
atgtcagaagctctggagcagttattcagatataaagaagctttagaatttgctcttgcc
acgcaatgtctggatccatccaattccagtgttgcagaaaaggtggagaacttaaagaag
caaattgctgcagctgaatcggaaaaaaataataaggtaaatgatggtgcggcaaggcct
gaacctcgatctggaagagtactctcattgagtgatatactctaccggtcagaggctaat
agtgatgcttctcaagatggtccaaggtctgaaagagaagattctgattatgatgaagaa
ttggaggtggactttgaaacatcaatatcaggtgatgaagggcgtgatgttgaaaccaat
gttctacatggaagtttgaatgtgagaatccatcgaagaggtgattccactagagaaatt
ggtggaaatggttcctgtggttcacctgcctcatcatctcaaaatagttggacatcttac
cagcctgaggcagccgttgatatgaaacgtagatttgttggccactgtaatgttggaact
gacattaagcaagccagttttcttggtcaacaaggtgactatgttgctagtgggagtgat
gatggtagatggtttatttgggaaaagcaaactggcagattgatcaaaatgcttgttgga
gatgatgctgttgttaactgtgtacagtgccatccctttgattctgttgtagcaaccagt
ggaattgataacacaataaagatatggactcctagtgcttctgttccctcaattgttgct
ggaggagcagcaggaccagaaacagctgatgtattggaagccatggaaagcaatcaacag
aaattaagtcgtagtcgtgaacctatcctgccctttgaacttcttgaacggtttcgaatg
catgaattttctgaaggatccctgcatccatttgagtgtgctcagagctaa
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