Methylobacterium indicum: mvi_12450
Help
Entry
mvi_12450 CDS
T07581
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mind
Methylobacterium indicum
Pathway
mind03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mind00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
mvi_12450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mind03021
]
mvi_12450 (rpoC)
03400 DNA repair and recombination proteins [BR:
mind03400
]
mvi_12450 (rpoC)
Enzymes [BR:
mind01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
mvi_12450 (rpoC)
Transcription machinery [BR:
mind03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
mvi_12450 (rpoC)
DNA repair and recombination proteins [BR:
mind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
mvi_12450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCM82784
UniProt:
A0A0J6R2M5
LinkDB
All DBs
Position
complement(1361747..1365952)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYVTIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLDKIAADLREEIATTTSELKPKKLLKRLKIIEAFQMSGNRPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLSIVADGSPGEHKPNDPKNPMRGVFG
DFGELEHALAARTVTLHTKIKWRWKGLDSEGNEVSRIYDTTPGRVILSSVLPRHKRVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMGLGFIHAFRAGISFGKDDMVVPDNK
WSIVDETRTLVKDYEQQYQDGLITQGEKYNKVVDAWAKCSDRLAGEMMNRISSVQKDEHG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTESGIRMRAIIDAGQVVAS
LATRILGRATAEDLVANDGSIIVAKGETIEEKHLEPITKAGIQEVKIRSVLVCATRNGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TVRIRNRGLARNSDGDLVAIGRNVAVVIVGPDGTERAVHRLQYGARVRVDEGDAIKRGQR
IAEWDPYTRPILTEIDGIVAYEDLIDGQSITETTDESTGIAKRVVIDWRGSARTADLRPA
IAVHDQNGRVQKLPRGSDARSILPVEAIIGVDPGTRVKAGDILARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTISFGRDYKNKRRLSLTPHDGSEPVEYLIPKGKHIHL
QDGDVVELGDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEITDGGDSEILTGDQIDRMELAEFNEKLLAEGKKPIQGVPVLLGITKASLQTRS
FISAASFQETTRVLTEAAVNGKVDNLEGLKENVIVGSLIPAGTGAMIADIKSIARRRDGL
IMAQKSAESGAAVAEQLPAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaaccagcaggctcagcctcagagcttcgaccag
atcaagatctcgatctcgtcgcctgagaagatcctgtcctggtcctacggcgagatcaag
aagcccgagaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgtgcc
cggatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtgatctgcgagaagtgcggcgtcgaggtgaccctcgcgcgcgtccgtcgc
gaccgcatgggccatatcgagctcgccgcgcccgtcgcccatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggatctcgagcgcatcctg
tacttcgagtcctacgtcaccatcgagccgggcctcacccccctgaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcgcaggaggagtacggcgaggactcgttcaccgcc
atgatcggcgcggaggcgatccggcgcatcctgcaggagctcgacctcgacaagatcgcg
gccgacctgcgcgaggagatcgccaccaccacctccgagctgaagcccaagaagctcctc
aagcgcctcaagatcattgaggcgttccagatgtcgggcaaccggccggaatggatgatc
ctgacggtcgtgccggtgatcccgccggacctgcgcccgctcgtgccgctcgacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctcaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcggatg
ctgcaggaggcggtcgacgcgctgttcgacaacgggcggcgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtggtcggc
ccggagctgaagctgcaccagtgcgggctgcccaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggcttctcggccacggtgaagcaggccaag
aagctcgtcgagaaggagaagccggaagtctgggacatcctggacgaggtgatccgcgag
caccccgtgatgctgaaccgggcgccgacgctgcaccggctcggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaggcgcagctg
gaagcgcgcgtcctcatgatgtcgaccaacaacatcctgcacccggccaacggcgcgccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcgtcgccgac
gggtcgccgggtgagcacaagccgaacgatccgaagaacccgatgcggggcgtgttcggc
gatttcggcgagctcgagcacgcgctcgcggcccgcaccgtgacgctgcacaccaagatc
aagtggcgctggaagggtctggattccgagggcaacgaggtctcgcggatctacgacacc
accccgggccgggtgatcctgtcgagcgtgctgccgcgccacaagcgcgtccccttcgac
gtcgtcaacaagctgatgacgaagaaggagatctcggcgatgatcgacaccgtctaccgc
cattgcggtcagaaggagtcggtgatcttctgcgaccggatcatgggtctgggcttcatc
cacgccttccgggccggcatctcgttcggcaaggacgacatggtggtgccggacaacaag
tggtcgatcgtcgacgagacccgcacgctcgtgaaggattacgagcagcagtaccaggac
ggcctgatcacccagggcgagaagtacaacaaggtcgtggacgcctgggccaagtgctcc
gaccgtctcgccggcgagatgatgaaccgcatctcgtccgtgcagaaggacgagcacggc
gccgacaagcaggtcaactcgatctacatgatgagccactccggcgcccgtggctcgccg
gcgcagatgaagcagctcgcggcgatgcgcggtctgatggccaagccctcgggcgagatc
atcgagaccccgatcatctcgaacttcaaggaaggcctcgacgttctcgagtacttcaac
tcgacgcacggcgcccgcaagggtctggccgacaccgcgctcaagaccgccaattccggc
tacctgacccgccgcctcgtcgacgtggcgcaggacgcggtgatccgcgaggtggattgc
ggcaccgagagcggcatccggatgcgcgcgatcatcgatgccggccaggtcgtggcctcg
ctggcgacccgcatcctcggccgcgccacggccgaggacctggtcgccaatgacggctcg
atcatcgtcgccaagggcgagacgatcgaggagaagcacctcgagccgatcaccaaggcc
ggcatccaggaggtgaagatccgctcggtcctggtctgcgcgacccggaacggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacgcccgtcaacatgggcgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctcacgatgcgcaccttc
cacatcggcggcgcggcccagatcgccgactcgtccttcatcgagtcgagcttcgagggc
acggtgcggatccgcaaccgcggtctcgcccgcaactcggacggcgacctcgtcgcgatc
ggccgcaacgtcgcggtcgtgatcgtcgggccggacggcaccgagcgggcggtccaccgc
ctgcaatacggcgcccgcgtccgtgtcgacgagggcgacgcgatcaagcgcggccagcgc
atcgccgagtgggatccctacacccggccgatcctgaccgagatcgacggcatcgtggcc
tacgaggacctgatcgacggccagtcgatcaccgagacgaccgacgagtcgaccggcatc
gccaagcgcgtcgtcatcgactggcgcggctcggcgcggacggcggacctgcgtccggcg
atcgcggtccacgaccagaacggccgcgtgcagaagctgccgcgcggttcggatgcccgc
tcgatcctgccggtcgaggcgatcatcggcgtcgatccgggcacccgggtcaaggccggc
gacatcctcgcccgcgtctcgaccgacagcgccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcccgtcggccgaaggacgcggcgatcatcgccgag
aagtccggcacgatctcgttcgggcgcgactacaagaacaagcgccgcctgagcctgacc
ccgcatgacggctcggagccggtggagtacctgatcccgaagggcaagcacatccacctg
caggacggcgacgtggtcgagctcggcgacttcatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtcgaggagctcgccgcctacctcgtcaacgagatccag
gaggtctaccggctccagggcgtgtcgatcaacgacaagcacatcgaggtgatcgtccgg
cagatgctgcagaaggtggagatcaccgacggcggcgattccgagatcctgacgggcgac
cagatcgaccggatggagctggccgagttcaacgagaagctgctcgccgagggcaagaag
ccgatccagggcgtcccggtcctgctcggcatcaccaaggcgtcgctgcagacccgctcg
ttcatctcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaac
ggcaaggtcgacaacctcgagggcctgaaggagaacgtcatcgtcggctcgctgatcccg
gcgggcaccggcgcgatgatcgccgacatcaagtcgatcgcgcgccgccgcgacggcctg
atcatggcccagaagtcggccgagagcggcgcggcggtcgccgagcagctcccggcggcc
gagtag
DBGET
integrated database retrieval system
