Methylobacterium indicum: mvi_19780
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Entry
mvi_19780 CDS
T07581
Symbol
mfd_1
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mind
Methylobacterium indicum
Pathway
mind03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mvi_19780 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mind03400
]
mvi_19780 (mfd_1)
Enzymes [BR:
mind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mvi_19780 (mfd_1)
DNA repair and recombination proteins [BR:
mind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
mvi_19780 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCM83517
UniProt:
A0A8H8WSN0
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All DBs
Position
2158864..2162157
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AA seq
1097 aa
AA seq
DB search
MAKRRVERRAQAGTEESVAPLVPPGALAVALLGLRDRGRPLVHVARDTRRLEEIAALLRA
LAPGIGVAVYPEWDCLPFDRASPSRGTMGARAGVLRWLTDAANLPDILLTTAPALIQRVP
PPETWAGARVELKAGDPLDPGRLTAELQRLGYILDDRVDEPGEVAVRGRTVDVFPAAAPR
PCRIEHDGGKVTAIRSYDPVSQRSLDEVGTLVVDPATEIVLAPDAPVRLKPFSGQEHQLP
TLYGRLATVLDYVPEARLVVEAGAEARADAFFEQIADGRGAATSARGKAAPLYLAPEEWH
EAREAREVAVATKEEGDAIAVPAFLRERRPGSAFSAYLRERLKAGERVVLAGDAAALKRL
SRQAARAAERSVRPVADWAQAVAAKPGEIVALPAPLDAGFRVPELAATVIAAPDVHGGAS
AKPGTGQPVILPMGEVDLRVGDVAVDRDHGLCVFEGLERITTGDGGATEALRLRFAGDAI
LMVPVAQADRIWRYGSEEEAVTLDKLEGGTWARRRLTTEAGLARAARAMLEAAGLRAKAK
APALVPPEREMERFGAGFGFPLTPDQARAVDGALADLASARPMDRLVCGDVGFGKTEVAL
RAAAAALLAGKQVAVVAPTTVLVRQHLRTFARRFARFGIEVAQLSRLVPPAEAKKVRQGL
ADGAIRLVVGTQALAGRGVAFADLGLVVIDEEQRFGAALKESLRGMAGDAHVLTLTATPI
PRTLQSALVGLKSLSVIATPPAVRQPIRTLLTPLHDDTVRAALMREKGRGGQSFVVCPRI
EEIGPMAERLKALVPELATVVAHGEMKPAELDEIMVRFADGEGDVLLATSIIESGLDVPR
ANTMLVHDAERFGLAQLHQLRGRVGRGQRRGVAYLLTRPDRDLPPAAEKRLRTLEALDRL
GAGFAISARDLDLRGAGDLVGENQAGHVKLIGLGLYQHLLHLALRAAKGEPAEDWAPEIH
LGLSGDVPEDYVPEPEVRLSLYTRLLRLGAAEEVEALRGEVEDRFGPPPAGVRALFALAH
LRVACLRLGIARLTGGPQGLAVDFRPGCAPAAMPLGEELTAREGRLILRRPCDDQDRRGE
QAGEFLHLIQEARDHQG
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgcagggtggaacggcgcgcacaggcgggaaccgaggagagcgtggcgccg
ctggtgccgcccggcgccctcgcggtggcgctcctcggcctgcgcgaccggggccgtccg
ctggtccacgtcgcccgcgacacccgccggctggaggagatcgccgccctcctgcgcgcg
ctcgcgccggggatcggcgtcgcggtctacccggaatgggactgcctgcccttcgaccgc
gcctcgccgtcgcgcggcacgatgggagcgcgggccggcgtgctgcgctggctcaccgat
gccgcgaacctgcccgacatcctgctcaccaccgccccggcgctgatccagcgggtgccg
ccgcccgagacctgggccggggcccgggtcgagctgaaggccggcgatcccctcgatccc
gggcggctcaccgcggaactccagcgcctcggctacatcctcgacgaccgggtcgacgag
cccggcgaggtcgcggtgcgggggcgcacggtcgacgtcttcccagccgccgcgccacgg
ccctgccgcatcgagcatgacggcggcaaggtcacggcgatccgcagctacgatccggtg
tcgcagcgctccctcgacgaggtcgggaccctggtggtcgatccggcgaccgagatcgtg
ctcgccccggacgcgccggtgcggctcaagccgttcagcggccaggaacaccaattgccg
actctctacgggcggctcgccaccgtgctcgactacgtgccggaggcccgcctggtggtc
gaggccggcgcggaggcccgcgccgacgccttcttcgagcagatcgccgacgggcgcggc
gccgcgacgagcgcccgcggcaaggcggcgccgctctacctcgcccccgaggagtggcac
gaggcccgcgaggcccgcgaggtggcggtggcgaccaaggaggagggggacgcgatcgcg
gtcccggccttcctgcgcgagcgccggcccggctcggccttctcggcctatcttcgcgag
cgcctgaaggccggcgagcgggtggtgctggccggcgacgcggcggcgctcaagcggctg
tcgcgccaggcggcccgggcggcggagcgcagcgtgaggccggtcgccgactgggcgcag
gcggtggccgccaagcccggcgagatcgtggcgctgcccgcccccctcgacgcgggattc
cgggtgccggaactcgccgcgacggtgatcgcggctcccgacgtccatggcggcgcctcg
gcgaagcccggcaccgggcagccggtgatcctgccgatgggcgaggtcgatctccgggtc
ggcgacgtggcggtggaccgcgaccacggcctgtgcgtgttcgaggggctggagcgcatc
acgaccggcgacggcggcgccaccgaggccctgcgcctgcgctttgccggcgatgccatc
ctgatggtgccggtggcccaggccgaccggatctggcgctacggctcggaggaggaggcg
gtgaccctcgacaagctcgagggcggcacctgggcccggcgccggctgacgacggaggcc
ggcctcgcccgggcggcccgggccatgctggaggccgcggggctgcgcgcgaaggcgaaa
gccccggctctcgtcccgccggagcgcgagatggagcgcttcggcgccggcttcggcttc
ccgctcacccccgaccaggcccgcgccgtcgacggggcgctggccgacctcgcctcggcg
cggccgatggaccgcctcgtctgcggcgatgtcggtttcggcaagactgaggtggcgctg
cgcgccgccgccgcggcgctgctcgccggcaagcaggtggcggtggtcgcgcccaccacc
gtgctggtgcgccagcacctgcgcaccttcgcgcggcgcttcgcccggttcggaatcgag
gtggcgcagctctcgcgcctcgttccgccggccgaggccaagaaggtccgccagggcctc
gccgacggcgcgatccgcctcgtcgtcggcacccaggcgctcgccgggcgcggtgtcgcc
ttcgcggatctcggcctcgtggtgatcgacgaggagcagcgcttcggcgccgccctcaag
gagagcctgcgcggcatggcgggcgacgcccacgtcctgacgctgaccgcgacgccgatc
ccccgcaccctgcaatcggcgctcgtcggcctgaagtcgctgagcgtcatcgccaccccg
cccgcggtgcgccagccgatccgcaccctgctgaccccgctccacgacgacaccgtgcgg
gcggcgctgatgcgcgagaagggccgcggcggccagagcttcgtcgtctgcccgcgcatc
gaggagatcggcccgatggccgagcggctgaaggccctggtgccggagctcgccaccgtc
gtggcccacggcgagatgaagccggcggagctcgacgagatcatggtgcgcttcgccgac
ggcgagggtgacgtgctgctcgccacctcgatcatcgagagcggcctcgacgtgccgcgg
gccaacaccatgctggtccacgatgcggaacgcttcggcctggcgcagctgcaccagctg
cgcggccgggtcgggcgcggccagcgccggggcgtcgcctacctgctgacccggcccgac
cgcgacctgcccccggccgccgagaagcgcctgcggaccctggaggccctcgaccggctc
ggtgcgggcttcgccatcagcgcccgcgacctcgacctgcgcggcgccggcgacctcgtc
ggcgagaaccaggccggccacgtcaagctgatcgggctcggcctctaccagcacctgctg
cacctggcgctccgcgccgccaagggcgagccagcggaggactgggcccccgagatccat
ctcggtctctcgggcgacgtgccggaggattacgtgcccgaacccgaggtgcgcctgagt
ctctacacccggctcctgcgcctcggcgcggccgaggaggtcgaggctctgcgcggcgag
gtcgaggaccggttcgggccgccgcccgccggggtgcgggcgctgttcgcgctggcgcat
ctgcgggtcgcctgcctgcggctcggcatcgcccgtctcaccggcgggccgcaggggctg
gcggtcgacttccggcccggctgcgccccggcggcgatgccgctcggcgaggaattgacc
gcccgcgagggtcggctgatcctgcgccgtccctgcgacgaccaggaccggcgcggcgag
caggcgggcgagttcctgcacctgatccaggaggcccgcgaccaccagggctga
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