Methylobacterium indicum: mvi_25650
Help
Entry
mvi_25650 CDS
T07581
Symbol
mfd_2
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mind
Methylobacterium indicum
Pathway
mind03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mvi_25650 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mind03400
]
mvi_25650 (mfd_2)
Enzymes [BR:
mind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mvi_25650 (mfd_2)
DNA repair and recombination proteins [BR:
mind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
mvi_25650 (mfd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCM84104
UniProt:
A0A8H8WTI8
LinkDB
All DBs
Position
complement(2761018..2764632)
Genome browser
AA seq
1204 aa
AA seq
DB search
MAKPTPKGSFQPPAPPATPKKPAVARFALPKSAALTRAVEALKAGDSATLARVPDGFDAL
VVADLARALSQVSEGPAVLVHVARDGTRSAAFASALAFVAPEIEVMSVPAWDCQPYDRIS
PNAAIAAQRMTALSRLSRTRSSAEKPRILTTTVNALVQRVPPKSRIAVETFSAAPGNALD
TDQIVAWLEANGFLRTGTVRDTGEYAVRGGIIDLSPPGLPNPVRLDFFGDTLESIRAFDP
ETQRTIGQLRSLDLVPMSEVQLTTETIRRFRQGYVTTFGAATRDDRLYETISEGRRYAGL
EHWMPLFYDHLDTLFDYVAGVPLILDNQVDDAVAERLSQVQEYYDARCEALKERQSGTAP
YKPLKPDALYLSPNEWAKRIEGATVARLAPFDVPEVSGRKLIDCEGVPGRNFAPERAQEG
VNVFDAAVGHVRDLQASGHHVVLAAWSEGSRDRLCGVLTEHGLPKPRTITRLSDILAMKR
GQDIGVAVWGLEGGFSAGQLAVVAEGDILGDRLVRPKRKAKRPQDVILEVQALAPGDLVV
HADHGIGRFVGLKTVTAAGAPHDCLEIQYSGGLLLLPVENIELLTRYGSEDADVALDKLG
GGAWQARKAKLKRRIMEMAGALIKVAAERFLKSAPKMAPPEGTYGEFAARFPYEETEDQE
AAIAATLGDLTSGRPMDRLVCGDVGFGKTEVALRAAFVTALSGKQVAVVVPTTLLARQHA
RTFEARFKGLPVNVAQASRFVSNTELKKVREGLADGSVDIVVGTHALLAKTIAFKDLGLI
IIDEEQHFGVSHKERLKALKAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAV
RTFVMPFDPLSIREALLRERYRGGQAFYVVPRIEHLEEVKRFLDREVPEAKVAVAHGQMA
AGQLEDVMTAFYEGQYDILLATTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRS
KARAYALFTTPEGKPLTVQAERRLSVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGH
VKEVGYELYQQMLESAVAALKSGNALPTDEQWSPTIALGAPVTMPEHYVADLSVRLGLYR
RLATLENDRELESFGAELIDRFGPMPPEVEELLKIVTIKILCRETNVEKVEAGPKGIVMH
FRDRAFANPAKLAGYIADQRSFAKVRPDMSVVFIRDLATVAERLKETTAILRDLVKLITR
KKAA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccacccccaaaggctccttccagccccccgccccgcccgcaactccgaaa
aagcccgcggtcgcccgtttcgccctgccgaaatccgcggcgctgaccagggccgtggag
gcgctgaaggccggagacagcgcgacgctggctcgcgtgccggacgggttcgacgccctg
gtggtggccgacctcgcccgcgccctgtcgcaggtctccgaggggccggcggtgctggtc
cacgtcgcccgcgacggcacccgctcggcggccttcgccagcgcgctcgccttcgtggcg
cccgagatcgaggtgatgagcgtcccggcctgggactgccagccctacgaccggatctcg
ccgaacgccgccatcgcggcgcagcggatgaccgctctgtcgcggctttcccgcacccgc
tcctcggccgagaagccgcgcatcctcaccaccacggtcaacgccctggtgcaaagggtg
ccgcccaaatcccgcatcgccgtcgagacgttttccgccgcccccggcaacgcgctcgac
accgaccagatcgtcgcctggctcgaggccaacggcttcctgcgcaccggcaccgtgcgc
gataccggcgaatacgcggtgcgcggcggcatcatcgacctgtcgccgcccggcctcccc
aacccggtccgcctcgacttcttcggcgacaccctcgaatcgatccgcgccttcgatccc
gagacccagcgcaccatcgggcaattgcgctccctcgacctcgtgccgatgagcgaggtg
cagctcaccaccgagacgatccggcgtttccgccagggctacgtcacgaccttcggcgcc
gcgacccgggacgaccggctctacgagacgatcagcgagggaaggcgctatgccggcctc
gagcactggatgccgctgttctacgaccacctcgacacgctgttcgactacgtcgccggc
gtgcccctcatcctcgacaaccaagtcgacgacgcggtggccgagcgcctgtcccaggtg
caggaatactacgacgcccgctgcgaggccttgaaggagcgtcagagcggcaccgcgccc
tacaagccgctcaaacccgacgcgctctatctctcgccgaacgagtgggcgaaacggatc
gagggcgcgacggtcgcgcggcttgcccccttcgacgtgccggaggtctcgggccgcaag
ctgatcgactgcgagggcgtgcccggccgcaacttcgcaccggagcgcgcccaggagggc
gtcaacgtcttcgacgcggcggtcggccacgttcgcgacctccaggcctcgggccatcac
gtcgtcctggcggcgtggtcggagggctcccgcgaccggctctgtggcgtgctgaccgag
cacgggttgccgaagcccaggaccatcacgcgcctctccgacatcctggcgatgaagcgc
ggccaggacatcggcgtcgcggtctggggcctggagggcgggttctcggcgggccagctc
gccgtggtggcggagggcgacatcctcggcgaccggctggtgcggcccaagcgcaaggcc
aagcgcccccaggacgtgatcctggaggtgcaggcgctcgcgccgggcgacctcgtggtc
catgccgatcacggcatcgggcggttcgtcggcctcaagacggttacggcggcgggcgca
ccgcacgactgcctggagatccagtatagcggcggcctgctgctcctgccggtcgagaac
atcgagcttctgacccgctacggctcggaggatgccgacgtcgccctcgacaagctcggc
ggcggcgcctggcaggcgcgcaaggccaagctcaagcgccggatcatggagatggccggc
gccctcatcaaggtcgcggcggagcgcttcctgaagtcggcgccgaagatggccccgccg
gaaggcacctacggcgagttcgccgcccgcttcccctacgaggagaccgaggaccaggag
gcggcgatcgccgccaccctcggcgacctcacctccggccggccgatggaccggctggtc
tgcggcgatgtcggcttcggcaagaccgaggtggcgctgcgcgccgccttcgtcaccgcc
ttgtcgggcaagcaggtcgccgtggtggtacccaccaccctgctggcgcgccagcacgcc
cgcaccttcgaggcccggttcaagggcctgccggtgaacgtggcgcaggcctcccgcttc
gtcagcaacactgagctgaagaaggtccgcgagggcctggccgacggctcggtcgacatc
gtggtcggcacccacgcgctcttggccaagaccatcgccttcaaggatctcggcctcatc
atcatcgacgaggagcagcatttcggcgtctcccacaaggagcggctgaaggcgctgaag
gcggaggtccacgtcctgacgctctccgccacgccgatcccccgcacgctccagctcgcg
atgaccggggtgcgcgaactctcgatcatcgcgacgccgccggtcgatcgcctggcggtg
cgcaccttcgtgatgccgttcgatccgctctcgatccgcgaggcgctcctgcgcgagcgc
tatcgcggcggccaggccttctacgtcgtgccgcgcatcgagcacctggaggaggtcaag
cgcttcctcgaccgcgaggtgccggaggccaaggtggcggtggcccacggccagatggcg
gcgggccagctcgaggacgtgatgacggccttctacgagggccagtacgacatcctgctc
gccaccacgatcgtcgaatcgggcctcgacatcccgaccgccaacaccttgatcgtccac
cgcgccgacatgttcggcctcgcccagctctaccagctgcgcgggcgcgtcggccgctcc
aaggcccgggcctacgccctgttcaccacgccggagggcaagcccctgacggtgcaggcg
gagcgccgcctctcggtgctgcaatccctcgacacgctgggtgccggcttccagctcgcc
agccacgacctcgacatccgcggcgccggcaacctcttgggcgacgagcagtccggccac
gtcaaggaagtcggctacgagctctaccagcagatgctggagagcgcggtggcggcgctc
aagtccggcaacgcgctgccgaccgacgagcaatggtcgccgaccatcgcactcggcgcc
cccgtcacgatgccggagcactacgtcgccgatctctcggtgcggctcggcctctatcgc
cgcctcgccacgctcgagaacgaccgggaactggagagcttcggcgccgagctgatcgac
cgcttcggcccgatgccgccggaggtggaagagctcctgaagatcgtgacgatcaagatc
ctgtgccgcgagaccaatgtcgagaaggtcgaggccggcccgaagggcatcgtcatgcac
ttccgcgaccgcgccttcgccaacccggccaagctcgccggctacatcgccgatcagcgc
tccttcgccaaggtgcggccggacatgagcgtggtgttcatccgtgatctggcaacggtg
gcggagcggctgaaggagacgacggcgatcctgcgggacctggtgaagctgatcacgcgg
aagaaggcggcgtga
DBGET
integrated database retrieval system
