Methylobacterium indicum: mvi_50080
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Entry
mvi_50080 CDS
T07581
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mind
Methylobacterium indicum
Pathway
mind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
mvi_50080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mind03019
]
mvi_50080
Enzymes [BR:
mind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
mvi_50080
Messenger RNA biogenesis [BR:
mind03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
mvi_50080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
CMS1
Shikimate_DH
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BCM86547
UniProt:
A0A8H8WZ05
LinkDB
All DBs
Position
complement(5414426..5416003)
Genome browser
AA seq
525 aa
AA seq
DB search
MKAVPRARLAAIPLPKFKKIPLTQFTDFGLAAPILKALAQAGYVTPTPIQAQAIPPAMQG
KDLCGIAQTGTGKTASFALPILHRLATEGAGKPAPRRSCRVLVLAPTRELASQIADSFKD
YGQFLKLTTTVVFGGVTIGRQERALANGVDVLVATPGRLLDLIDRRSLTLDGVEYLVLDE
ADQMLDLGFIHALKRIVKLLPAQRQSLFFSATMPKNIAGLADQYLKNPVQVAVTPVATTA
ERVDQKVVFVPTGSKQQLLATILRDEAIDRVLVFTRTKHGADRVVRGLERDGIGSAAIHG
NKSQPQRERALAAFRAGTCRVLVATDIAARGIDVDGVSHVVNFDLPNVPEAYVHRIGRTA
RAGKDGLAISFCNDEEKAYLRDIERLTRQKVPVMAIPEGFVPPSREEAAQAVAEAERDRR
QPGSGPRGQRPGGGRQGQQPGGRQGQPAGRQGQPRHGAGRPQEHREPRANDGRGGHEGRQ
GRPQGQGQGRPQGGGRADGNRQQRPAGGGGNRDGRAIGWLDRAPR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgtgccccgtgcgcgccttgcggcgatcccgctgccaaaattcaagaagatt
cctttgacccagttcaccgatttcggcctcgcggcgccgatcctgaaggcgctcgcccag
gccggctacgtcacgccgaccccgatccaggcgcaggcgatcccgcccgccatgcagggc
aaggacctgtgcggcatcgcccagaccggcaccggcaagaccgcctccttcgcgctgccg
atcctgcaccgtctcgccaccgagggcgccgggaagcccgcgccgcgccgcagctgccgc
gtgctggtgctcgcgcccacccgcgagctcgccagtcagatcgccgacagcttcaaggat
tacggccagttcctgaagctcaccaccacggtggtgttcggcggcgtcaccatcggccgc
caggagcgggcgctggccaacggcgtcgacgtgctggtcgccaccccgggccggctcctc
gacctgatcgaccgccgctcgctgaccctcgacggcgtcgaatacctcgtcctcgacgag
gccgaccagatgctcgacctcggcttcatccatgcgctgaagcgcatcgtgaagctgctg
ccggcccagcgccagagcctctttttctcggccaccatgccgaagaacatcgccgggctg
gccgaccagtacctgaagaacccggtccaggtcgcggtgaccccggtcgctaccaccgcc
gagcgggtcgaccagaaggtcgtcttcgtgccgaccggctcgaagcagcagttgctcgcc
acgatcctgcgcgacgaggcgatcgaccgggtgctggtcttcacccgcaccaagcacggc
gccgaccgcgtggtgcgcggcctcgagcgcgacggcatcggctcggcggcgattcacggc
aacaagtcgcagccgcagcgcgagcgggcgctcgccgccttccgcgccggcacctgccgg
gtgctggtggcgaccgacatcgccgcccgcggcatcgacgtcgacggcgtgtcccacgtc
gtcaacttcgacctgccgaacgtgccggaggcctacgttcaccgcatcggccgcaccgcg
cgcgccggcaaggacggtctcgccatctcgttctgcaacgacgaggagaaggcctacctg
cgcgacatcgagcgcctgacccgccagaaggtgccggtgatggcgatccccgagggcttc
gtgcccccgagccgcgaggaggcggcgcaagccgtcgccgaggccgagcgcgaccggcgc
cagcccggctcgggcccgcgcggccagcgtcccgggggcggccgccagggccagcagccc
ggtgggcgccagggccagccggcgggccgtcagggccagccgcgccacggcgccggccgt
ccgcaggagcaccgcgagccccgcgccaacgatgggcgcggcggccacgagggacgtcag
ggccggccgcagggccagggccagggccgtccccagggcggcggacgcgccgacggcaac
cgccagcagcgtccggcgggcggcggcggcaaccgcgacggccgcgcgatcggctggctc
gaccgcgccccgcgctga
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