Methylobacterium indicum: mvi_59200
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Entry
mvi_59200 CDS
T07581
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mind
Methylobacterium indicum
Pathway
mind02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mind00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
mvi_59200 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mind03021
]
mvi_59200 (rpoD)
Transcription machinery [BR:
mind03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
mvi_59200 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF16
Motif
Other DBs
NCBI-ProteinID:
BCM87459
UniProt:
A0A0J6R3G5
LinkDB
All DBs
Position
complement(6412555..6414552)
Genome browser
AA seq
665 aa
AA seq
DB search
MATKATERDETEAAPEQQTDGPLLDLTDASVKRMIKLAKKRGYVTYDELNEVLPQEEFTS
EQIEDVLGQLSELGVNVVEAEEADEQQGEAPAQEGAEEEEASEGGEVAEVAAARPVALRA
ETTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAI
IIWRDELVDGRVLLRDIIDLEATYAGPDGRAGPAEGEGEAEEEGDAEGETPPEGEGDEDD
LENNVSLSAMEAELKPRVLETFDAIAENYRKLRKVQAEQAETRLKGAEASESQGQRYSEL
KNTVVADVKSLSLNANRIEALVEQLYDINKRLISHEGRLMRLAENHGVARDEFLRHYQGY
ELDPHWVERVAKLGGKGWKNFTERGAVNILTLREQIISLASETGLEIQEYRKIVHMVQKG
EREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLA
MPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaggcaacggaacgagacgagaccgaggcggcccccgagcagcagaccgac
ggcccgctcctcgacctgacggatgcctccgtcaagcggatgatcaagctcgccaagaag
cgcggctacgtcacctacgacgagctgaacgaggtgctgccccaggaggagttcacctcc
gagcagatcgaggacgtgctcggtcagctgtccgagctgggcgtgaacgtggtcgaggcc
gaggaggccgacgagcagcagggcgaggccccggcccaggagggcgccgaggaggaagag
gcgagcgagggcggcgaagtcgccgaggtcgccgccgcccgccccgtcgccctgcgcgcc
gagaccaccaaggagccgacggatcgcaccgacgatccggtgcggatgtacctgcgcgag
atgggctcggtcgagcttctctcccgcgagggcgagatcgcgatcgccaagcggatcgag
gccgggcgcgaggcgatgatcgccggcctgtgcgagagcccgctgaccttccaggccatc
atcatctggcgcgacgagctcgtcgacggccgggtgctcctgcgcgacatcatcgatctc
gaagccacctatgccggccccgacggccgcgccggccccgccgagggcgagggcgaggcc
gaggaggagggcgacgccgagggcgagaccccgccggaaggcgagggcgacgaggacgac
ctcgagaacaacgtgtcgctgtcggccatggaggccgagctgaagccgcgcgtgctcgag
accttcgacgcgatcgccgagaactaccgcaagctgcgcaaggtccaggccgagcaggcc
gagacccggctcaagggcgccgaggcctccgagtcgcaagggcagcgctactccgagctg
aagaataccgtcgtcgccgacgtgaagtcgctgtcgctcaacgccaaccgcatcgaggcg
ctggtcgagcagctctacgacatcaacaagcgcctgatctcgcacgagggccgcctgatg
cggctcgccgagaatcacggcgtcgcccgcgacgagttcctgcgccactaccagggctac
gagctcgatccgcactgggtcgagcgggtggccaagctcggtggcaagggctggaagaat
tttaccgagcgcggcgccgtcaacatcctgactttgcgcgagcagatcatctcgctcgcc
tccgagaccggcctggagatccaggagtaccggaagatcgttcacatggtccagaagggc
gagcgcgaagcccgccaggccaagaaggagatgatcgaggcgaacctccggctcgtgatc
tcgatcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggagggc
aatatcggcctgatgaaggccgtggataagttcgagtatcgccgcggctacaagttctcg
acttacgcgacctggtggatccggcaggcgatcacccgctcgatcgccgatcaggcccgc
acgatccgcatcccggtgcacatgatcgagacgatcaacaagatcgtccggacctcgcgc
cagatgctgcacgagatcggccgcgagccgaccccggaggagctggccgagaagctggcg
atgccgctggagaaggtccgcaaggtcctcaagatcgccaaggagccgatctccctcgag
actccgatcggcgacgaggaggattcccacctcggcgacttcatcgaggacaagaacgtc
gtcctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccacgacgcgggtgctc
gcctcgctcaccccccgcgaggagcgggtgctgcgcatgcgcttcggcatcggcatgaac
accgaccacaccctcgaggaggtcggccagcaattctcggtgacccgcgagcgtatccgc
cagatcgaggccaaggccctgcgcaagctcaagcacccgagccggtcgcgcaagctgcgc
agcttcctcgacaactga
DBGET
integrated database retrieval system
