Macadamia integrifolia (macadamia nut): 122057008
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Entry
122057008 CDS
T07436
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122057008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122057008
03041 Spliceosome [BR:
ming03041
]
122057008
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122057008
Spliceosome [BR:
ming03041
]
Complex B
Other components
Prp19-related factors
122057008
Complex C
122057008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
NRDE-2
ARM_TT21
ARM_TT21_C
PPR
Motif
Other DBs
NCBI-GeneID:
122057008
NCBI-ProteinID:
XP_042474923
LinkDB
All DBs
Position
12:8534928..8549675
Genome browser
AA seq
916 aa
AA seq
DB search
MSIPKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARNEAPFKKRAVIYERALKALPGSY
KLWYAYLRERLEIVRNLPITHSQYESLNNTFERALVTMHKMPRIWVMYLLSLTEQKLLTR
TRWTFDRALCALPVTQHERIWEPYLIFVSQKGVPVETSLRVYRRYLKFDPTHIEEFIEFL
LNSSLWQEAAERLAGVLNDPQFYSIKGKTKHQLWLELCDLLINHATEVSGMKVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLPEKARDIYEEGMMTVVTVRDFSVIFDTYSQFEESTL
AYVMEQLDLEEDGSIEDGGMEDNAFEVEGDPRLDFKLSESKFKEKIFRGFWLKDVYDVDL
RLSRLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYEDHKDIANARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNF
KGALELMKRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWAFYVDLEESLGTLESTRAV
YGRILDLRIATPQIIINYSLLLEEHKYFEDAFKVYERGVQIFKYPHVKDIWVTYLTKFVN
RYKSMKLERARELFEHAIEKAPAEYVKPLYLQYAKLEEQYGLAKRAMKVYDQAAKAVPDN
EKMGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCMKYAELEKSLGEIDRGR
AIYQFSSQFADPRSDADFWKRWHDFEVQHGNEDTFREMLRIKRSVAASYSQMHFILPEYS
MQKDQKLNLEETVDTLKRAGVPEDEMAALERQLAPAATNAPAKDTGRKVGFVSAGVESQP
GVIRTPDGGRKVTANNEEIELPEDSDTENDEGVELEIAQKPVPDEVFGDLAPNKEPSREE
PDKLGALERIKRQRRA
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcccaaggagctgtaccctagtcaggacgatctgctctatgaagaagagata
ctaaggaatcctttcagcttgaaactatggtggaggtacctcatcgctcggaacgaagca
ccattcaagaaacgagctgttatttacgaaagagctctcaaagctctccctgggagttac
aagctctggtatgcttaccttcgggaacgcctcgaaatcgttcggaatctccccatcacg
cactctcagtacgagagcctcaacaatactttcgaacgagcactcgttaccatgcataag
atgcctcggatctgggttatgtatctgttgagtttgacggagcagaagctgctcactcgt
acgcgttggaccttcgatcgagctctctgtgctcttcccgtaacccagcacgagcggatt
tgggaaccctaccttatttttgttagccaaaagggcgtacctgtcgagacttccctgagg
gtttatcgccgatacttgaaatttgatccaacacacattgaggaatttattgagttcctt
ctaaattcgagtctctggcaggaggctgcagagcggctggctggggtattgaatgatccc
cagttttattcaatcaagggcaagacgaagcaccaattgtggcttgagctatgcgatctg
ctcattaatcacgccactgaggtgtctgggatgaaggtggatgcaatcatcaggggtggt
attaggaaatttacggatgaggttggacggctgtggacttccctggcagactactacatc
cgtaggggtctccctgagaaggcaagggacatctatgaggaaggaatgatgactgtggtt
actgttagggatttcagcgtgatttttgacacttactcccaattcgaagaaagtacgctt
gcttacgttatggaacaattagatttagaggaggatgggagtattgaggacggtggtatg
gaggacaatgcatttgaagtggagggagatccacgcttggatttcaagctttcagagtcg
aaattcaaggagaagattttccgtggtttttggttaaaggatgtgtatgatgtggattta
agattgtctcgattggagcatcttatggatagaaggcctgagcttgctaatagtgttcta
ctcaggcaaaatcctcacaacgttgaacagtggcaccggagggtcaagcttttcgagggc
aatccaacaaaacagatactgacctacactgaagctgtgaggactgtagaccccatgaag
gctgtggggaagcctcataccttatgggttgcttttgcaaagctgtatgaggaccacaag
gacattgctaatgcaagggttatttttgataaggcggtccaagtcaactacaaaactgtg
gataatcttgcaagtgtttggtgtgaatgggcagagatggaattgagacacaagaatttc
aaaggggcattggagctaatgaagcgtgccactgcagaaccctcagtcgaggtgaagcgg
agagtcgctgctgatgggaatgaaccggtgcagatgaagcttcacaaatccttgaggtta
tgggccttttatgtggatttggaggagagccttgggactttggagtccactcgtgctgta
tatgggcggatacttgatttgaggatagccactccacaaattataataaattactctttg
cttttggaggagcataaatactttgaggatgcattcaaggtatatgaaagaggcgtgcag
atctttaagtatccgcatgtcaaggatatttgggtcacatatcttaccaaatttgtcaac
cggtataaaagtatgaagttggaaagggcaagagagttgtttgaacatgctattgaaaag
gcacctgcggaatatgtcaaacctttgtatctacaatatgcgaaattggaagagcaatat
ggtctagcaaagcgtgcaatgaaggtttatgatcaagctgcgaaggctgtgccagataat
gagaaaatgggcatgtatgaaatttacattgctcgtgcagccgagatttttggtgttccg
aaaacaagggagatatatgagcaagccatagaatctggtctcccagacaaagatgttaag
accatgtgcatgaagtatgctgaattagaaaagagcctaggagaaattgatcgtggtcgt
gcaatataccaattctcatcccagtttgcagatccacgatctgatgctgatttctggaaa
agatggcatgacttcgaggttcaacatggaaatgaagacaccttcagagaaatgctccgc
atcaagcgcagtgttgctgccagctatagccagatgcacttcatcctcccagaatattca
atgcaaaaagatcagaagttgaaccttgaggaaactgtggacacactgaagcgtgctggg
gtccctgaagatgaaatggctgctctagaaaggcagttggcccctgcagcaactaatgca
cctgcgaaggacactggcagaaaagtgggctttgtcagtgctggtgtggagtcgcaacct
ggcgttatccgaactccagatggagggaggaaggtaactgctaataatgaggaaatagaa
ttgccagaggacagtgacacagagaacgatgaaggggttgaacttgaaattgcccaaaaa
cctgttccagatgaggtttttggggatttggcaccgaataaagagccgagtagggaggaa
cctgataaacttggtgcgcttgagaggataaagaggcagagacgggcatag
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