Macadamia integrifolia (macadamia nut): 122057356
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Entry
122057356 CDS
T07436
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122057356
03015 mRNA surveillance pathway
122057356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122057356
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122057356
mRNA cycle factors
P-body specific factors
122057356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122057356
NCBI-ProteinID:
XP_042475362
LinkDB
All DBs
Position
12:complement(6195697..6227949)
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AA seq
1206 aa
AA seq
DB search
MEHPEDECRGGGEHASKQDDEESAARVEEFKRSIEAKIALRQSNLNPERPDTGFLRTLDS
SIRRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAISDAKLRTSDIQAAVQIC
SLLHQRYKDFAPSLIQGLLKVFFPGKSGDESEADRSLKAMKKRSTLKLLLELYFVGVIEE
TSIFVSIIKDLTSLEHLKDRDTTQTNLSLLSSFARQGRVLLGLPLSGQEILEEFFKGLNI
TADQKKIFRKAFFTYYDAAAELLHSEHASLRQTEHENAKILNAKGELSEENAASYEKLRK
SYDQLFRGVSSLAEALDMQPPVMPEDGHTTRVTTGEDASSPASGKESSVLEPVWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKMVEHSPKTQDQPITQESAMEPDQGHLASREAAEVSV
NPGAAPEGKTDEKGKGKEDKEKTKDSDKEKGKEKDNERKGESEKEKLKGLEGTNLDVFLQ
RLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK
DVSSMLLQLLEEEFNFLTNKKDQMNIETKIRNIRFIGELCKFKIAPTGLVFGCLKACLDD
FTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYL
CKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWDECEEYLLKCFMKV
HKGKYSQVHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLEMNDYGIQQRRIAHMRFLG
ELYNYEHIDSSVIFETLYLILVFGHGTAEQDVLDPPEDCFRIRMIITLLQTCGHYFDRGS
SKRKLDRFLVYFQRYILSKGSIPLDIEFDLQDLFADLRPNMIRYSSIEDLNSALIELEEH
ERSVLTDKGNSEKHSDTEIRKRPVRVNSIATSANEQNPENGIEENGRGHEDVVGDSESDS
GSGSIDQEGNEDDEELYEDKSENQEDGCDSDEEDDDAGAPIASDEDDEIQVRQKVVEVDP
QEEAEFDREFRALMQESLESRKLELRARPTLNMTIPMNVFEGSAKDHHGRSTEGESGDEV
MDEEGGVGSKKDVCVKVLVKRGNKQQTKQMFIPKDCSLVQSTKQKEAAELEEKQDIKRLV
LEYNDREEEELNGMGMQAMNWMQTGGSRPSGRGSVWDGTGGRVAGLRHRHHNHPTGGGGL
YYGRRK
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggaacacccggaagacgaatgtcgcggtggcggcgaacatgccagtaaacaagatgat
gaggaatctgctgctcgtgtcgaggaatttaaaagatctattgaggcaaagattgctttg
cggcagagtaatctgaatcctgagagacctgacacaggttttctcaggacattagattcc
agcataaggcgcaatacagctgttattaaaaagcttaagcagataaatgaagaacagagg
gaaggcttaatggatgacttacggggtgtcaacttaagcaaatttgttagtgaagctgtc
acagctatatctgatgccaagctcagaacatcagacatacaagcggctgttcagatatgt
tctttgcttcatcaaaggtacaaagactttgccccgagcctgattcaaggccttttgaaa
gtcttctttcctggaaaatctggggatgagtcagaggctgataggagcttgaaggctatg
aagaagcgcagcactttgaaactgctccttgaactttactttgttggagtgatagaagag
accagcattttcgtcagcatcattaaggaccttaccagcttggagcatttaaaggaccgt
gatacgactcaaacaaatctatctcttctttccagttttgctcgacagggaagagtgttg
cttggacttcctctttcaggacaagagattctcgaagagttttttaagggcctcaatatt
acagcggatcaaaagaaaatctttaggaaggcattctttacatactatgatgctgctgca
gaactgctccactccgagcatgcttcactccgtcagacggaacatgaaaatgctaagatt
ttaaatgccaaaggggagcttagcgaagaaaatgctgcttcatatgaaaaattgcggaaa
tcctacgatcagttattccgtggtgtttcatctttagcagaagcgcttgatatgcaacct
cctgtaatgccagaggatggtcacacaaccagggttacaactggagaggatgcatcatct
cctgcttctggaaaagagtcttctgttcttgaaccagtatgggatgacgaagacacaagg
gcattttatgaatgcttacctgatctgagagcatttgtccctgccgtgttacttggagaa
gcagagccgaaaatggttgagcactctcccaagacgcaagatcaaccaattacacaggaa
tcggcaatggaaccagaccaaggtcatttggcttcacgggaggccgcagaggtctcagta
aaccctggagctgcaccagaggggaaaactgatgagaaagggaagggcaaagaggataag
gaaaagactaaagactcagataaggagaaagggaaagaaaaagataatgaaagaaaagga
gaaagtgagaaggagaaactgaaaggtcttgaagggacaaatttggatgttttcttacag
agacttcctggttgtgtgagccgtgacctcattgatcagttgactgtggagttctgttat
ttaaattcaaaatcaaatcggaaaaggcttgtgcgggcattgttcaatgttcctagaact
tctttggaattattgccatattactcacgcatggtggccacattatcaacgtgtatgaag
gatgtctcgtctatgcttttgcagttgttggaagaggagttcaacttcttgacaaataag
aaggatcaaatgaacattgaaacaaagattaggaatataaggtttattggagaactttgc
aagttcaaaattgcaccaacaggacttgtctttggttgtttgaaggcctgtttggatgat
tttactcatcacaacatagatgttgcctgcaaccttcttgagacatgtggacgcttcctg
tatcgatctcctgaaactacaatacgcatggcaaacatgttggagatattgatgcgcttg
aaaaatgtcaaaaatttagatcctcgtcacagcacccttgtagaaaatgcttattacctt
tgcaaaccacctgaacgttctgctcgagtctccaaagtacgtccaccgttgcatcagtat
atcagaaagcttcttttctctgaccttgataagtcctccattgagcatgtcctgaggcag
ctgcgtaagttaccttgggatgaatgtgaagaatacctattgaaatgctttatgaaggtt
cacaagggaaagtacagtcaagtgcacctcatagcttcacttactgctggtctgagtcgc
tatcacgatgaatttgctgtggcagttgttgatgaggttctggaggagatcagattgggg
ctggagatgaatgactatggaatacagcaacgccgcatagcacatatgcggttcttaggg
gagctgtacaactatgagcatatagattcatctgttatttttgaaacactttatttgatt
cttgtatttggtcatgggacagcagagcaagatgtgctggatccaccagaagattgtttc
cgcattcggatgatcattacacttctacagacgtgcgggcactactttgacagaggttct
tccaaaaggaagcttgacagatttttggtatattttcagagatatatcctcagcaaaggt
tcaatacctctagatattgaatttgacttacaggacctatttgcggatttacgcccaaac
atgattcgatattcatccattgaagatcttaattcagccctgatagagcttgaagagcat
gaacgttcagtattaactgataagggcaatagtgagaagcactcagacactgaaatccgc
aagcgtcctgttcgggtaaattctattgccacctcggcgaatgagcaaaaccccgaaaat
gggatagaagaaaatggcagagggcatgaagatgtggtaggagacagtgagagtgactca
ggaagtggcagcattgaccaggaggggaatgaagatgatgaagagttgtatgaggacaaa
tctgaaaatcaggaagatggatgtgacagcgatgaggaagatgatgacgcaggtgcaccc
attgcttctgatgaggatgatgagatccaagttaggcagaaggtggtagaggtggatcct
caagaagaagcggagtttgatcgtgagtttagagctctaatgcaggagagtttggagtcc
cgcaagctggagttgcgggccagaccaaccttgaatatgaccataccaatgaacgtgttt
gaaggatctgccaaggaccaccatggtaggagcacggagggagagagtggtgatgaagtg
atggatgaagagggaggtgtgggaagcaagaaggatgtatgtgtgaaggtccttgtgaaa
cgggggaacaagcaacaaacaaagcaaatgttcatccccaaggattgttcactggtgcag
agtactaaacagaaagaggctgctgagcttgaagagaaacaggacatcaagaggctggta
ttggagtataacgacagggaagaggaggaactcaatgggatggggatgcaggcaatgaat
tggatgcaaacagggggaagcagaccatctggccgtggcagcgtgtgggatggaactggt
gggagggtcgctggacttcgtcaccggcatcataatcacccaacaggtggtggtggatta
tattatgggagaagaaaatga
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