Macadamia integrifolia (macadamia nut): 122057532
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Entry
122057532 CDS
T07436
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122057532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122057532
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122057532
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122057532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122057532
NCBI-ProteinID:
XP_042475590
LinkDB
All DBs
Position
12:3718394..3739588
Genome browser
AA seq
669 aa
AA seq
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MSGLLNSALNGSSSNLPDTTGRSFVTSFSTQSAATSPVYHHAGTLQGLHNVHGSFNVPNM
PGTLGSRNSTLSGVPSSGIQQPMGSLSSGRFASNNIPVALSQISHGNSHGHSGVANRGGT
HIVLNPVLRSSMNGVGGSIPGILLTSAAFDNQIDVPGLGVSPILGNASPRITSSMGNIVG
GGNIGRSISSSGGLSVPGLASRLNMTANSGSGSLGVQGPNRLMSGVLQPASLQMISMLGN
SYPTAGGPLPQSQVQTGNNLSSMGMFNDVNSNDSSPFDMNDFPQLTGRPSSAGGPQGQLG
SIRKQNVGVSPVVQQNQEFSIQNEDFPALPGFNGGNSDYAMDLHQKEQLHDNVVSMMQSQ
HYPMGRSAGFNLGGTYSSHRPQQQQQHAPSVSGSGVSFTPANSQDMLHLHNSDHWVPSSH
AAYHSQVQTGGQPGIGLRPLNSPNSVSGIGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSF
RDQGMKSMQVPQAVPDRFGLLGLLSVIKMSDPVLMSLALGIDLTTLGLNLNSTDNLHKTF
GSPWSDEPSKGEPEYSVPECYYSKPPPVLHQMYFSKYQLETLFYVFYSMPKDEAQLYAAN
ELYNRGWFYHKENRLWFIRITNMEPLVKTNTYERGSYLCFDPNTWETVRKDNFVLHYELL
EKRPLLPQH
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggctacttaattcagctctgaatgggtcttcttcaaatctcccagacacaaca
ggtagatcctttgtgacatcgttttctacccagtctgcagccacatcccctgtttatcat
catgctggaaccttacaagggttgcataacgttcatgggagtttcaatgtgcccaacatg
ccaggcacactaggatctagaaattcaacactgagtggtgtcccttcaagtggcattcag
caaccaatgggaagcctatctagtggacgatttgcatcgaacaatattcctgttgctctt
tcacagatatcccatggcaactcacatggacattcaggggtcgcaaatagaggaggtaca
catattgtattaaatcctgtattaagaagtagcatgaatggagttggtggttctattcct
gggattctcctaacctctgctgcatttgataaccaaattgatgttccaggattgggagtc
tctccaattttgggaaatgcgagtccgcgaataacaagctcaatgggtaacattgttggt
gggggcaacatcggaaggagcataagctcaagtggaggattgtcggtccctggtcttgct
tcacgcctaaacatgactgctaacagtggatctgggagtctgggagtgcaaggacctaac
agattaatgagtggtgtgcttcaaccagcatcactgcagatgatttcgatgcttggaaat
tcatatcctacagctggaggcccgctacctcaaagccaagttcaaacagggaataattta
agctcaatgggaatgtttaatgatgtgaactccaatgacagttctccttttgacatgaat
gatttcccacagttgactgggcgccctagttctgctggagggccacaaggacaattgggt
tctatacggaagcaaaatgttggtgtaagtcctgtcgtccaacagaaccaagaattcagc
atccaaaatgaagatttcccagctttacctggattcaacggaggaaattctgattatgct
atggatttgcatcagaaagaacagcttcatgacaatgttgtgtccatgatgcaatctcag
cattacccaatgggcaggtctgctggattcaacttggggggaacatattcgtctcatcgt
ccacaacaacagcagcaacatgcgccatcagtcagtggcagtggggtttcctttactcct
gctaacagtcaagatatgctccatttacataactctgatcattgggtcccatcttcccat
gcggcctatcactcgcaggtacaaactggtggtcaacctggaattggattgagacctttg
aactctccaaattcagtatctggtataggctcatatgatcagcttattcaacagtatcaa
caacaccaaaatcaatcacagtttcggctgcagcaaatgtcagctgtgaatcaatcgttt
agagatcagggcatgaagtcaatgcaggtgccacaagctgttcctgatcgatttggtttg
cttggtttgttaagtgtgataaagatgagtgatcctgtcctgatgtctcttgcacttgga
atcgatctgacgactcttgggctaaatttgaactcaacggataaccttcacaaaactttt
ggttccccatggtccgatgagccctccaagggagagccagagtacagtgtaccagaatgt
tattattccaagccaccacctgtgctacatcaaatgtatttttcaaaataccagttggaa
acgttgttttatgtcttttacagcatgccgaaagatgaggcacagttgtatgcggctaat
gaactgtataatagagggtggttctaccacaaagaaaaccgtctatggttcataaggatc
accaacatggagccacttgttaagacaaacacttacgagaggggatcctacctatgtttt
gatccaaacacatgggaaacagttcgcaaggataactttgttctccattatgagttgttg
gagaagagaccattgctacctcaacattaa
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