Macadamia integrifolia (macadamia nut): 122058123
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Entry
122058123 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122058123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122058123
03009 Ribosome biogenesis [BR:
ming03009
]
122058123
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122058123
Spliceosome [BR:
ming03041
]
Complex A
U1 snRNP components
U1 related factors
122058123
Complex B
122058123
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
Pre-60S particles
Helicases
122058123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
122058123
NCBI-ProteinID:
XP_042476553
LinkDB
All DBs
Position
12:20966312..21035015
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AA seq
566 aa
AA seq
DB search
MSYVPPHLRQSSATRSSTASKTTSETLDNDQKQSSSSLHYSSLQSKGSSSSYSGFSHAAN
RTPASLSHSRTLPPLEPVFQQWKPSERVFRLKPEQIEEVRLRLNVDVTVASDSQPAPAPI
ESFTDMCLDPSIMKDIAFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMI
QHCLAQPPIQRGDGPLALVLAPTRELAQQIEKEVKSFSRSLESFKTAIVVGGTIIAEQRS
ELRAGVNIVVATPGRFIDHLQQGNTFLSRISFVVLDEADRMLDMGFEPQIREVMRNLPKN
HQTLLFSATMPVEIEALAQEYLTNPVQVKVGKVSSPTPNVSQILEKVSENEKIDRLLALL
VDEASQAERTGHPQPLTIVFVERKMRCDEVTESLVAQGLHAVALHGGRSQSEREAALCDF
RSGATNILVATDVASRGLDVTGVAHVVNLDLPKAMEDFVHRIGRTGRAGSTGQATSFYTD
RDMFLVAHIRKAIADVESGNVVAFATGKVARRKEREAAAAQREARLSVSKISVSGLASIN
IEDKYRYMLTPTTIKKEGAADDAWDD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatgttccacctcaccttcgacaatcttctgcaactcggagctccacagcttcc
aaaactacatcagaaaccctagataacgatcaaaagcagtcatcttcaagccttcattac
tcttctcttcagtccaagggctcttcctctagttactccggcttctcccatgctgcgaat
cggacccccgccagtctctcacattcgagaactctccccccgcttgaacctgttttccag
cagtggaagccgtccgagcgagttttccgtctgaagcctgaacagattgaagaggttcgc
ttgcgattgaatgttgatgttactgttgcttcagattctcagcctgctcctgcaccaatt
gaatcatttacagatatgtgtttggatccgagcatcatgaaggatatcgcttttcatgag
tatacaaggccaacttcaatccaggcccaagcaatgccagtagctcttagtggaagggat
cttttgggatgtgctgagacagggagtgggaaaactgctgctttcactattcccatgatc
cagcattgcttggctcaacctcctattcagcgtggtgatgggcctttggctctagtattg
gctccaacaagagagctagcgcaacagatagagaaagaggtcaagtcttttagcagatct
ctggagtccttcaaaactgctattgttgtgggtggaacaatcatagcagaacagaggtct
gagctgcgagcgggagtaaatattgtggttgccacaccaggaagatttattgatcatttg
cagcaaggaaataccttcctttctaggatttcatttgttgttttagatgaagctgacaga
atgctggacatgggttttgagccacagataagagaggtgatgcggaaccttccgaaaaat
catcaaactttgttgtttagtgcaaccatgcctgtggagattgaagcacttgcacaggag
tatctgaccaaccctgtccaagtaaaagtggggaaagtaagcagtcctacgccaaatgta
tctcaaatattggagaaagtctctgaaaatgagaagatcgataggcttctggctttgctt
gttgatgaggcttctcaggctgagaggactggccatccacagcccctgaccattgttttt
gttgagaggaagatgaggtgtgatgaagtcacagaatctttggtagcgcaaggtcttcat
gctgttgctcttcatggtggccgtagccagagtgaaagggaggcagctctctgtgatttt
agatctggtgctaccaatattttggttgctactgatgttgcatctcgtggtctggatgtg
accggagttgctcatgttgttaatctagatcttccaaaggcaatggaggattttgtgcat
cggattggaaggacaggacgtgctggatctacaggccaggctacatcattctatactgat
cgagacatgttccttgtggcgcacataaggaaagcaattgcagatgtagagtctggaaat
gttgtggcatttgcaacggggaaggttgcaagaaggaaggagagagaagctgcagctgcc
caaagagaggctaggctttcggtatcgaaaatttcagtgtcgggtttagcatcaataaac
attgaggacaagtacaggtatatgctaaccccaacaaccataaagaaggagggtgctgct
gacgatgcttgggatgactga
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