Macadamia integrifolia (macadamia nut): 122058902
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Entry
122058902 CDS
T07436
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122058902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122058902
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122058902
mRNA degradation factors
5'-3' decay
Decapping complex
122058902
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
122058902
NCBI-ProteinID:
XP_042477548
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Position
13:complement(6779248..6795551)
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AA seq
818 aa
AA seq
DB search
MDGFNGGSGIQGNPFTGLAETSSGNALFDASQYAFFGKNVVGEVELGGLEEEDGDIPFVG
IEDEEYRLSEREEAEGLGSLSDIDDLAGTFSKLNKVIGEPRNAGVIGDRGSFSRESSSAA
DWAQEPDFPNWLDPHIFDADSVQEGKRWSSQPHPLSARAESESLYRTSSLPQQKQQQQHF
SSEPILVPKSTFTSYPPGGRSQQASPNHHSRHQNIPPLTGGSQMPFSAPNLSPFSNPQLH
LSGLPHGLHYGGSLPQFTPSGLPISSRPQNHWGNQASLFSGDNTSIVNNFLQQQLPHPSG
LMHQQLMSQQQQQQRMHHPGQPSLAHFSPLQTQLFNAHPSPHVISKYEAMLGATDLRDQR
IRSTQRGRPNLRFSQQGSDPSSQKSDNGWPQFRSKYMTAEEIESILRMQHAATHSNDPYI
DDYYHQARLAKKTAGARLKHHFCPTHLRDLPSRARANAEPHAYLQVDALGRVPFSSIRRP
RPLLEVDPPSAYSGEGNVDQKVSEKPLEQEPMLAARITIEDGLCLLLDVDDIDRLLEFNQ
PQDGVQLRRRRQVLLEGLAASLQLVDPLGKGGHAVGPAPRDDLVFLRLVSLPKGRKLLSR
YLQLLIPGSELIRIVCMAIFCHLRFLFGGLPSDMGATETTINLARTVSVCVRNMDLSALS
ACLAAVVCSSEQPPLRPLGSTAGDGASVILKSVLERATELLTDPQVATNYSMSNRALWQA
SFDAFFGLLTKYCVSKYDSIVQSLLMQAPPNTAAIGAEAARAISKEMPVELLRASLPHTD
DHQRKLLVDFAQRSMPVTGFNVHGGGSGGHINSESVPG
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggatggatttaatggtggttctggtattcaagggaaccctttcacgggattagcagag
acttcctcagggaatgcactctttgacgcatcacagtatgcattctttggtaagaatgtt
gtgggggaagttgagctgggaggattagaagaggaagatggtgacatcccttttgttggg
attgaagatgaggagtatcgtttgtcagaaagagaagaggctgaaggtttaggatcttta
tctgatattgatgaccttgccggtactttttcaaagctgaacaaggtcattggtgaacca
agaaatgcaggagttattggtgacaggggatctttttctagggaaagttcatctgccgct
gactgggcacaagagccggattttcccaactggttagatccacatatttttgacgctgac
agtgttcaggaaggcaaaagatggtcgtcacagccgcatcctttgtctgctcgtgccgaa
tcagaatctttgtacagaacatcttcgttacctcagcagaaacaacagcagcaacatttc
tcaagtgaaccgattttagttcccaaatcaactttcacttcctaccctcctggtggccga
tctcagcaggcttcaccaaaccaccattcacgccaccaaaacattccacctcttaccgga
ggatctcagatgcctttttctgctccaaatctctctcctttctctaatcctcagcttcat
ttgtctggcttgcctcatgggctgcattatggtggaagtttaccacagttcactccttca
ggcctcccaattagtagcaggccgcagaaccactggggaaaccaagctagtctattttct
ggagataacaccagcattgtgaacaatttcttgcaacaacaattgcctcatccgagtggg
ttgatgcaccaacaattaatgtcacaacagcagcaacaacaaagaatgcatcaccctggt
caaccatctttggctcatttttcacctttgcagacgcaactatttaatgcccatccttct
ccacatgtaattagcaagtatgaggcaatgcttggagcgactgatctgagggaccagaga
attagatcgacgcagaggggaagaccgaacctgcgtttttctcaacagggctctgatcct
agtagccagaagagtgataatgggtggccacagtttaggtcgaagtatatgacagctgaa
gagatagagagtattctgagaatgcagcatgctgctacacatagcaatgacccgtatata
gatgattactaccaccaggcacgtcttgcaaaaaaaactgctggggcaaggctgaagcac
catttctgcccaactcacctacgggatctgccttcccgtgcacgtgctaatgctgaacca
catgcttatctacaagttgacgccctcggtagggttccattctcttctatacgtcgtcct
cgtccattgcttgaggttgatcctccatctgcttactctggcgaaggcaatgttgaccag
aaagtttctgagaagcctctggaacaagaacccatgcttgctgcacgcataacgattgaa
gatggtctgtgtctcctccttgatgtggatgatattgatagacttctagaattcaatcaa
ccacaagatggagttcagctgaggaggaggaggcaggtactactggaggggcttgcggcc
tctctccagctagttgacccactaggcaaaggtggccatgcagtaggaccagcccccagg
gatgacctcgtgttcttaaggttagtctctcttcccaagggacggaagctcctctcaagg
tacctacagctcctcattcctgggagtgagcttatccggattgtttgcatggcaattttc
tgtcacctgaggttcttgtttggtggcctgccttctgatatgggagctactgagacaaca
ataaatcttgcaagaactgtttctgtatgtgttcgtaacatggatcttagtgcacttagt
gcttgtctggctgcagtagtttgttcctctgaacagcctcctctccgtccccttggtagc
actgctggagatggggcttctgttatcttaaaatctgtccttgagagggcaactgagctg
ctaactgatcctcaggttgctaccaactacagcatgtccaaccgggctctttggcaggca
tcctttgatgctttctttggtctgctcactaaatactgtgtgagcaagtatgacagcatt
gtgcagtcattgcttatgcaagcaccaccaaatacagcagctattggagcagaggcagcc
agggctattagtaaagagatgccagtggagctgttaagagcgagtcttcctcacactgat
gaccaccaacgaaagcttttggtggatttcgctcagcgctccatgcctgtcactggattt
aatgtccatggtgggggcagtggtggtcatataaattctgaatcggtgccaggttaa
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