Macadamia integrifolia (macadamia nut): 122058952
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Entry
122058952 CDS
T07436
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122058952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122058952
03019 Messenger RNA biogenesis [BR:
ming03019
]
122058952
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122058952
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122058952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf-CCCH
zf-CCCH_12
Torus
zf-CCCH_2
zf_CCCH_4
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
122058952
NCBI-ProteinID:
XP_042477601
LinkDB
All DBs
Position
13:complement(6240747..6247351)
Genome browser
AA seq
379 aa
AA seq
DB search
MEDPEGVLSFDFEGGLENGSANPSASVPLIPTDSSAAVPGNPAPAPVAGDTIPGGPAGRR
SYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRMYGECREQDCVYKHTNDDIKE
CNMYKFGFCPNGPDCRYRHVKQDGPPPSVEEVLQKIQHLSSFNYGSNRFYQHRGGGYGQQ
IERPQFPQGPATVNQGLAVKISTTADSTNVQSQQPQQPQAQFQQQQVSQIQTQNLPNGVP
IQANRTATPLPQGSSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNDAFDSVEHVFLI
FSVNRTRHFQGCAKMTSKIGGFVGGGNWKHAHGTAHYGRNFSVKWLKLCELSFHKTRHLR
NPYNENLPVKVRSLTYGHI
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccccgaaggagtcctcagcttcgacttcgaaggcggcctcgaaaacggctcc
gccaatccctctgcttctgtccccttgatcccaactgactcctctgctgccgttcctgga
aaccccgcccctgctccggttgccggagatacgatccctggaggtcccgctggacggcga
agctaccggcagacagtatgtcggcactggctcaggagcctctgtatgaagggtgatgcc
tgtgggttcctacaccagtacgataaatcacggatgcctgtttgtcgattcttccgaatg
tatggagagtgtcgagagcaagattgcgtgtataagcacacaaacgacgacatcaaggag
tgtaatatgtacaaatttggattttgtccaaatggtcctgattgccggtataggcatgtg
aagcaagatggacctccaccttccgtggaagaagtcctccagaagattcagcatttgagt
tcattcaattatggctcaaacagattttaccagcaccggggtggtggttatggccaacaa
attgaaaggcctcagtttccacaaggtcctgcgactgtcaatcaaggtttagcagtaaaa
atatctaccactgctgactccaccaatgttcagtcacaacagccacaacaaccacaagct
cagtttcaacagcagcaggttagccagattcagacgcagaatctccccaatggtgtgcct
attcaagctaacagaacagctacaccacttcctcaaggttcatctaggtatttcattgtt
aaaagttgcaatcgcgaaaatttggaattatctgtgcaacaaggagtgtgggcaacccaa
agaagcaacgaggctaaattaaatgacgcctttgactcggtggagcatgtgtttttgatc
ttttccgtcaatcgaacacgccatttccagggatgtgcaaagatgacatctaaaattggt
ggatttgttggaggaggaaactggaaacatgcacatggcactgcacattatgggcgaaat
ttctctgtgaaatggttaaagctatgtgagctgtccttccataaaactcggcatttgagg
aatccatacaatgaaaacctccctgtaaaggtaagaagtttgacttatggccatatttga
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