KEGG   Macadamia integrifolia (macadamia nut): 122060199
Entry
122060199         CDS       T07436                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ming  Macadamia integrifolia (macadamia nut)
Pathway
ming03018  RNA degradation
ming03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ming00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122060199
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122060199
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ming03019]
    122060199
   03041 Spliceosome [BR:ming03041]
    122060199
Messenger RNA biogenesis [BR:ming03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122060199
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122060199
Spliceosome [BR:ming03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122060199
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 122060199
NCBI-ProteinID: XP_042479328
LinkDB
Position
13:complement(10870803..10877059)
AA seq 147 aa
MLPLSLLKTSQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGVGGRPVKGMGRSQDD
GGARGGRGRGGSGGRSGANRGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgctgcctctttctctactgaagacatcacaaggtcatcctatgttggtagaactgaag
aatggggagacctacaatgggcatctagtgaattgtgacacttggatgaacattcatctc
cgtgaagtcatctgtacctcaaaagatggagacaggttttggcgaatgccagaatgttac
atacgggggaatacaattaagtatcttcgtgtaccagatgaggtgattgataaagttcag
gaagaaaccaagagccgagcagacaggaagccccccggagtaggccgtggaaggggaaga
ggtagggaggatggtgttggtgggaggccagtaaaaggcatggggcgtagccaagatgat
ggaggtgctagaggaggtcggggcaggggtggaagtggtggaaggagtggtgctaacaga
ggtggaggtcgtggtcgtggctga

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